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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101222 (52 seq.)
>W1710914149
LNTC01000120
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
3901
3985
+
Leu
TAG
[ENA]
¡û
>W1711055309
LRUQ01000094
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
135
51
-
Leu
TAG
[ENA]
¡û
>W1711055318
LRUR01000041
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
20269
20353
+
Leu
TAG
[ENA]
¡û
>W1711055367
LRUS01000086
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
69218
69134
-
Leu
TAG
[ENA]
¡û
>W1711055398
LRUT01000087
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
152369
152453
+
Leu
TAG
[ENA]
¡û
>W1711055420
LRUU01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
129230
129314
+
Leu
TAG
[ENA]
¡û
>W1711055435
LRUV01000036
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
190
106
-
Leu
TAG
[ENA]
¡û
>W1711055482
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
137
53
-
Leu
TAG
[ENA]
¡û
>W1711055512
LRUX01000036
Campylobacterota
Aliarcobacter skirrowii [LRUX]
31649
31733
+
Leu
TAG
[ENA]
¡û
>W1711055528
LRUY01000069
Campylobacterota
Aliarcobacter skirrowii [LRUY]
31651
31735
+
Leu
TAG
[ENA]
¡û
>W1711055558
LRUZ01000024
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
194
110
-
Leu
TAG
[ENA]
¡û
>WENV180283919
OBID01006423
[OBID] metagenome; sludge
3180
3096
-
Leu
TAG
[ENA]
¢þ
>W141274735
JABW01000003
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
19291
19207
-
Leu
TAG
[ENA]
¡û
>W141289855
JARS01000001
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
169733
169817
+
Leu
TAG
[ENA]
¡û
>W141289909
JART01000001
Campylobacterota
Arcobacter sp. AF1028 [JART]
169746
169830
+
Leu
TAG
[ENA]
¡û
>W141289961
JARU01000001
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
180738
180822
+
Leu
TAG
[ENA]
¡û
>W141290013
JARV01000001
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
300998
301082
+
Leu
TAG
[ENA]
¡û
>W141291647
JATO01000001
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
307037
307121
+
Leu
TAG
[ENA]
¡û
>WENV170657958
JTFP01037463
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
448
364
-
Leu
TAG
[ENA]
¢þ
>WENV170658641
JTFP01170184
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
108
192
+
Leu
TAG
[ENA]
¢þ
>WENV170726660
LSQX01389012
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1695
1611
-
Leu
TAG
[ENA]
¢þ
>C191084411
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
236781
236865
+
Leu
TAG
-
¡û
>C191084527
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
165457
165541
+
Leu
TAG
-
¡û
>C191095056
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1783355
1783271
-
Leu
TAG
-
¡û
>C191095102
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1834871
1834787
-
Leu
TAG
-
¡û
>C191122808
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
156017
156101
+
Leu
TAG
-
¡û
>W1911424319
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
269583
269667
+
Leu
TAG
[ENA]
¡û
>W1911424370
NXGD01000003
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
32661
32745
+
Leu
TAG
[ENA]
¡û
>W1911424424
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
516971
516887
-
Leu
TAG
[ENA]
¡û
>W1911424614
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
129256
129340
+
Leu
TAG
[ENA]
¡û
>W1911424670
NXGK01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
117701
117617
-
Leu
TAG
[ENA]
¡û
>W1911426133
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
529314
529230
-
Leu
TAG
[ENA]
¡û
>W1911426309
NXIG01000001
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
319332
319416
+
Leu
TAG
[ENA]
¡û
>W1911576096
PDJT01000011
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
7489
7573
+
Leu
TAG
[ENA]
¡û
>W1911576700
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
504445
504361
-
Leu
TAG
[ENA]
¡û
>W1911576739
PDKI01000001
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
166442
166526
+
Leu
TAG
[ENA]
¡û
>W1911748908
QWFD01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
385777
385693
-
Leu
TAG
[ENA]
¡û
>W1911748950
QWFE01000001
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
385777
385693
-
Leu
TAG
[ENA]
¡û
>W1810058608
PDKA01000010
Campylobacterota
Arcobacter sp. FW59 [PDKA]
27723
27807
+
Leu
TAG
[ENA]
¡û
>W1810584100
QEYG01000019
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
26343
26427
+
Leu
TAG
[ENA]
¡û
>W1810584130
QEYH01000001
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
178740
178824
+
Leu
TAG
[ENA]
¡û
>W1810584172
QEYI01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
375277
375193
-
Leu
TAG
[ENA]
¡û
>W1610896355
LRUQ01000094
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
135
51
-
Leu
TAG
[ENA]
¡û
>W1610896364
LRUR01000041
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
20269
20353
+
Leu
TAG
[ENA]
¡û
>W1610896413
LRUS01000086
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
69218
69134
-
Leu
TAG
[ENA]
¡û
>W1610896444
LRUT01000087
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
152369
152453
+
Leu
TAG
[ENA]
¡û
>W1610896466
LRUU01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
129230
129314
+
Leu
TAG
[ENA]
¡û
>W1610896481
LRUV01000036
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
190
106
-
Leu
TAG
[ENA]
¡û
>W1610896528
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
137
53
-
Leu
TAG
[ENA]
¡û
>W1610896558
LRUX01000036
Campylobacterota
Aliarcobacter skirrowii [LRUX]
31649
31733
+
Leu
TAG
[ENA]
¡û
>W1610896574
LRUY01000069
Campylobacterota
Aliarcobacter skirrowii [LRUY]
31651
31735
+
Leu
TAG
[ENA]
¡û
>W1610896604
LRUZ01000024
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
194
110
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK