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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101373 (36 seq.)
>W1711083820
LSVF01000008
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
36524
36440
-
Leu
TAG
[ENA]
¡û
>W131202131
ASWO01000001
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
792234
792151
-
Leu
TAG
[ENA]
¡û
>W131202162
ASWO01000004
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
87718
87635
-
Leu
TAG
[ENA]
¡û
>W1712067991
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
1306940
1306858
-
Leu
TAG
[ENA]
¡û
>W1712068000
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
968563
968481
-
Leu
TAG
[ENA]
¡û
>W1712068104
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
3313
3395
+
Leu
TAG
[ENA]
¡û
>W1712068232
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1493581
1493499
-
Leu
TAG
[ENA]
¡û
>W1712068240
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1219533
1219451
-
Leu
TAG
[ENA]
¡û
>W1712069292
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2925111
2925029
-
Leu
TAG
[ENA]
¡û
>W1712069300
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2569568
2569486
-
Leu
TAG
[ENA]
¡û
>W1712097163
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
5221
5303
+
Leu
TAG
[ENA]
¡û
>W1712097171
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
346028
346110
+
Leu
TAG
[ENA]
¡û
>WENV180168085
OAVP01009488
[OAVP] human gut metagenome; faeces
538
456
-
Leu
TAG
[ENA]
¢þ
>WENV180180460
OAWK01001878
[OAWK] human gut metagenome; faeces
1396
1478
+
Leu
TAG
[ENA]
¢þ
>WENV180497649
OCAE01016602
[OCAE] human gut metagenome; faeces
89
171
+
Leu
TAG
[ENA]
¢þ
>WENV180504366
OCAN01001869
[OCAN] human gut metagenome; faeces
5278
5196
-
Leu
TAG
[ENA]
¢þ
>WENV182404428
OIEU01024688
[OIEU] human gut metagenome; human gut
526
444
-
Leu
TAG
[ENA]
¢þ
>WENV182539740
OIXV01014765
[OIXV] human gut metagenome; faeces
151
233
+
Leu
TAG
[ENA]
¢þ
>WENV182938350
OKVD01003905
[OKVD] human gut metagenome; human gut
1244
1162
-
Leu
TAG
[ENA]
¢þ
>WENV182950266
OKVR01001676
[OKVR] human gut metagenome; human gut
722
804
+
Leu
TAG
[ENA]
¢þ
>WENV170542245
CXPZ01002277
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
650
568
-
Leu
TAG
[ENA]
¢þ
>WENV170542714
CXQH01000597
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
2968
2886
-
Leu
TAG
[ENA]
¢þ
>WENV170542744
CXQH01001209
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
5480
5562
+
Leu
TAG
[ENA]
¢þ
>WENV170545161
CXRU01004369
[CXRU] human gut metagenome genome assembly hF5, contig hF5_contig006704.; ENVO:feces
311
393
+
Leu
TAG
[ENA]
¢þ
>WENV170545784
CXSH01002204
[CXSH] human gut metagenome genome assembly hG8, contig hG8_contig003709.; ENVO:feces
645
563
-
Leu
TAG
[ENA]
¢þ
>WENV170546136
CXSN01003005
[CXSN] human gut metagenome genome assembly hH3, contig hH3_contig008817.; ENVO:feces
510
428
-
Leu
TAG
[ENA]
¢þ
>C181114776
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3785797
3785715
-
Leu
TAG
-
¡û
>C181114785
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3453529
3453447
-
Leu
TAG
-
¡û
>C191110758
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
1260200
1260282
+
Leu
TAG
-
¡û
>C191110809
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
1047826
1047744
-
Leu
TAG
-
¡û
>C191151724
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
665138
665054
-
Leu
TAG
-
¡û
>C191171375
CP039710
Bacillota
Thermoactinomyces vulgaris 2H [CP039710]
2587842
2587758
-
Leu
TAG
-
¡û
>W09115667
ACAO01000056
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
180
262
+
Leu
TAG
[ENA]
¡û
>W141812013
JPZM01000060
Bacillota
Thermoactinomyces sp. Gus2-1 [JPZM]
7714
7798
+
Leu
TAG
[ENA]
¡û
>W1610922573
LSVF01000008
Bacillota
Thermoactinomyces sp. AS95 [LSVF]
36524
36440
-
Leu
TAG
[ENA]
¡û
>W1710559403
FOMP01000006
Bacillota
Enterococcus casseliflavus [FOMP]
255901
255819
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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