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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101417 (41 seq.)
>W1711185727
LWNQ01000008
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
8283
8365
+
Tyr
GTA
[ENA]
¡û
>W1711186317
LWOD01000004
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
10442
10360
-
Tyr
GTA
[ENA]
¡û
>W1711190859
LWSF01000023
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
128472
128390
-
Tyr
GTA
[ENA]
¡û
>W1711790866
MWIH01000006
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
552456
552540
+
Tyr
GTA
[ENA]
¡û
>W131011093
AICW01000505
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
2316
2232
-
Tyr
GTA
[ENA]
¡û
>W131011113
AICX01000176
Actinomycetota
Saccharomonospora halophila 8 [AICX]
2633
2549
-
Tyr
GTA
[ENA]
¡û
>W131202826
ASXH01000017
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
74137
74219
+
Tyr
GTA
[ENA]
¡û
>W131206292
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
721230
721148
-
Tyr
GTA
[ENA]
¡û
>WENV180312712
OBJZ01000057
[OBJZ] human gut metagenome; fecal sample
8319
8401
+
Tyr
GTA
[ENA]
¢þ
>WENV180505136
OCAO01016639
[OCAO] human gut metagenome; faeces
112
30
-
Tyr
GTA
[ENA]
¢þ
>WENV180554425
OCJN01000832
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
2380
2462
+
Tyr
GTA
[ENA]
¢þ
>W141215936
AZUM01000004
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
175568
175484
-
Tyr
GTA
[ENA]
¡û
>WENV182812781
OJXV01000011
[OJXV] human gut metagenome; human gut
8078
8160
+
Tyr
GTA
[ENA]
¢þ
>WENV182819751
OKAF01006140
[OKAF] human gut metagenome; human gut
425
343
-
Tyr
GTA
[ENA]
¢þ
>WENV182825505
OKCK01000162
[OKCK] human gut metagenome; human gut
8110
8192
+
Tyr
GTA
[ENA]
¢þ
>WENV182831701
OKEG01000203
[OKEG] human gut metagenome; human gut
10420
10338
-
Tyr
GTA
[ENA]
¢þ
>WENV182839083
OKGZ01003903
[OKGZ] human gut metagenome; human gut
328
246
-
Tyr
GTA
[ENA]
¢þ
>WENV182845646
OKJE01000302
[OKJE] human gut metagenome; human gut
4409
4327
-
Tyr
GTA
[ENA]
¢þ
>WENV182849741
OKKT01002442
[OKKT] human gut metagenome; human gut
428
346
-
Tyr
GTA
[ENA]
¢þ
>WENV182855192
OKMY01000254
[OKMY] human gut metagenome; human gut
6834
6752
-
Tyr
GTA
[ENA]
¢þ
>WENV183087973
OLJQ01001377
[OLJQ] human gut metagenome; human gut
1035
1117
+
Tyr
GTA
[ENA]
¢þ
>W141400437
JDRS01000006
Actinomycetota
Dermabacter hominis 1368 [JDRS]
164416
164334
-
Tyr
GTA
[ENA]
¡û
>C191157666
CP038101
Actinomycetota
Saccharomonospora xinjiangensis 31sw [CP038101]
401606
401688
+
Tyr
GTA
-
¡û
>W141712018
JMQG01000075
Actinomycetota
Amycolatopsis mediterranei [JMQG]
64338
64254
-
Tyr
GTA
[ENA]
¡û
>W141712165
JMQJ01000030
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
13548
13464
-
Tyr
GTA
[ENA]
¡û
>W1910321376
FSEE01000020
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
150144
150062
-
Tyr
GTA
[ENA]
¡û
>C141001901
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
7275550
7275466
-
Tyr
GTA
[Ensembl]
¡û
>W1810187286
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
8476
8558
+
Tyr
GTA
[ENA]
¡û
>C10100537
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
7265649
7265565
-
Tyr
GTA
[Ensembl]
¡û
>C11100928
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
7265693
7265609
-
Tyr
GTA
-
¡û
>W11181159
AGIT01000114
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
1222
1138
-
Tyr
GTA
[ENA]
¡û
>W11181177
AGIU01000004
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
63728
63810
+
Tyr
GTA
[ENA]
¡û
>W11181222
AGIU01000173
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
781
863
+
Tyr
GTA
[ENA]
¡û
>C121015489
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
7275618
7275534
-
Tyr
GTA
-
¡û
>W1610095041
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686951
686869
-
Tyr
GTA
[ENA]
¡û
>W121010568
AGJI02000002
Actinomycetota
Saccharomonospora glauca K62 [AGJI]
80638
80722
+
Tyr
GTA
[ENA]
¡û
>W121036285
AHLY01000001
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
413229
413311
+
Tyr
GTA
[ENA]
¡û
>W121045497
AICV01000012
Actinomycetota
Saccharomonospora xinjiangensis XJ-54 [AICV]
1760110
1760028
-
Tyr
GTA
[ENA]
¡û
>W1710097836
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686951
686869
-
Tyr
GTA
[ENA]
¡û
>W1710580395
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
421047
420963
-
Tyr
GTA
[ENA]
¡û
>W1710628067
JPRA01000007
Actinomycetota
Amycolatopsis mediterranei [JPRA]
216905
216989
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK