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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101644 (38 seq.)
>W131179522
ARML01000105
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
137104
137188
+
Leu
TAG
[ENA]
¡û
>W131214915
ATUO01000101
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
13763
13847
+
Leu
TAG
[ENA]
¡û
>W131221457
AUAM01000022
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
86845
86929
+
Leu
TAG
[ENA]
¡û
>W131221482
AUAM01000082
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
7024
7108
+
Leu
TAG
[ENA]
¡û
>C016563
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
3122391
3122307
-
Leu
TAG
[Ensembl]
¡û
>C016574
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1612236
1612152
-
Leu
TAG
[Ensembl]
¡û
>w015546
AAPG01000047
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
16187
16273
+
Leu
TAG
[ENA]
¡û
>w015543
AAPG01000047
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
15597
15683
+
Leu
TAG
[ENA]
¡û
>w015540
AAPG01000047
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
15138
15224
+
Leu
TAG
[ENA]
¡û
>WENV180042571
LQAF01006219
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
271
355
+
Leu
TAG
[ENA]
¢þ
>WENV180396949
OBPW01046363
[OBPW] marine metagenome; seawater
227
143
-
Leu
TAG
[ENA]
¢þ
>WENV181211148
OFBJ01013240
[OFBJ] metagenome; hydrothermal vent
422
338
-
Leu
TAG
[ENA]
¢þ
>W141169728
AXWP01000028
Gammaproteobacteria
Psychromonas arctica DSM 14288 [AXWP]
11777
11861
+
Leu
TAG
[ENA]
¡û
>W141169746
AXWP01000074
Gammaproteobacteria
Psychromonas arctica DSM 14288 [AXWP]
92
8
-
Leu
TAG
[ENA]
¡û
>W141252242
CBRF010000426
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
324
240
-
Leu
TAG
[ENA]
¡û
>W141252249
CBRF010000439
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
258
174
-
Leu
TAG
[ENA]
¡û
>WENV170014399
AYRF01022528
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2
86
+
Leu
TAG
[ENA]
¢þ
>W09105750
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
512451
512535
+
Leu
TAG
[ENA]
¡û
>W09105799
AAQS01000007
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
6416
6500
+
Leu
TAG
[ENA]
¡û
>W1910871964
NDFH01000003
Gammaproteobacteria
Psychromonas sp. CD1 [NDFH]
437522
437606
+
Leu
TAG
[ENA]
¡û
>W1910871967
NDFH01000003
Gammaproteobacteria
Psychromonas sp. CD1 [NDFH]
785478
785562
+
Leu
TAG
[ENA]
¡û
>W1810154451
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
347630
347546
-
Leu
TAG
[ENA]
¡û
>W1810154484
PIZM01000004
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
69021
69105
+
Leu
TAG
[ENA]
¡û
>W1810154487
PIZM01000004
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
69398
69482
+
Leu
TAG
[ENA]
¡û
>W1810154490
PIZM01000004
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
69838
69922
+
Leu
TAG
[ENA]
¡û
>W1810154493
PIZM01000004
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
70187
70271
+
Leu
TAG
[ENA]
¡û
>W1810156921
PJBP01000009
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
321
237
-
Leu
TAG
[ENA]
¡û
>W1810156924
PJBP01000027
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
202
118
-
Leu
TAG
[ENA]
¡û
>W1810156928
PJBP01000058
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
124
40
-
Leu
TAG
[ENA]
¡û
>W1810157460
PJBZ01000043
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
145
61
-
Leu
TAG
[ENA]
¡û
>W1810157493
PJBZ01000070
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
33619
33535
-
Leu
TAG
[ENA]
¡û
>W1810157496
PJBZ01000070
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
33120
33036
-
Leu
TAG
[ENA]
¡û
>W1810157499
PJBZ01000070
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
32716
32632
-
Leu
TAG
[ENA]
¡û
>W1810157503
PJBZ01000070
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
31863
31779
-
Leu
TAG
[ENA]
¡û
>C131013808
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
1343271
1343355
+
Leu
TAG
[Ensembl]
¡û
>C131013815
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2113052
2113136
+
Leu
TAG
[Ensembl]
¡û
>C131013818
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2113512
2113596
+
Leu
TAG
[Ensembl]
¡û
>C131013821
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2114102
2114186
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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