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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101648 (57 seq.)
>W131001267
AGXA01000001
Bacillota
Alloiococcus otitis ATCC 51267 [AGXA]
651
733
+
Leu
TAG
[ENA]
¡û
>W1711079447
LSOC01000001
Bacillota
Halobacillus sp. KGW1 [LSOC]
582
665
+
Leu
TAG
[ENA]
¡û
>W1711079490
LSOC01000005
Bacillota
Halobacillus sp. KGW1 [LSOC]
730
648
-
Leu
TAG
[ENA]
¡û
>W131225850
AUDY01000001
Bacillota
Halobacillus kuroshimensis DSM 18393 [AUDY]
663
580
-
Leu
TAG
[ENA]
¡û
>W131066886
ANPF01000101
Bacillota
Halobacillus sp. BAB-2008 [ANPF]
745
663
-
Leu
TAG
[ENA]
¡û
>W131066895
ANPF01000131
Bacillota
Halobacillus sp. BAB-2008 [ANPF]
692
610
-
Leu
TAG
[ENA]
¡û
>W131225862
AUDY01000002
Bacillota
Halobacillus kuroshimensis DSM 18393 [AUDY]
1045
963
-
Leu
TAG
[ENA]
¡û
>C171112108
CP020772
Bacillota
Halobacillus mangrovi KTB 131 [CP020772]
3871230
3871148
-
Leu
TAG
-
¡û
>C171112140
CP020772
Bacillota
Halobacillus mangrovi KTB 131 [CP020772]
97654
97571
-
Leu
TAG
-
¡û
>W141082364
ATWS01000038
Bacillota
Bacillus sp. SB49 [ATWS]
654
572
-
Leu
TAG
[ENA]
¡û
>W141263491
CCDH010000006
Bacillota
Halobacillus karajensis dabanensis [CCDH]
782
699
-
Leu
TAG
[ENA]
¡û
>W141263517
CCDH010000011
Bacillota
Halobacillus karajensis dabanensis [CCDH]
604
686
+
Leu
TAG
[ENA]
¡û
>W141263560
CCDI010000006
Bacillota
Halobacillus karajensis [CCDI]
912
829
-
Leu
TAG
[ENA]
¡û
>W141263586
CCDI010000012
Bacillota
Halobacillus karajensis [CCDI]
748
830
+
Leu
TAG
[ENA]
¡û
>W141263640
CCDJ010000004
Bacillota
Halobacillus karajensis trueperi [CCDJ]
104896
104979
+
Leu
TAG
[ENA]
¡û
>W141263658
CCDJ010000005
Bacillota
Halobacillus karajensis trueperi [CCDJ]
604
686
+
Leu
TAG
[ENA]
¡û
>WENV170180446
CEOW01094687
[CEOW] marine metagenome genome assembly TARA_058_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
273
189
-
Leu
TAG
[ENA]
¢þ
>WENV170358782
CETK01139534
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
601
685
+
Leu
TAG
[ENA]
¢þ
>WENV170705115
LLEP01002624
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
934
850
-
Leu
TAG
[ENA]
¢þ
>WENV170705235
LLEQ01000824
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3599
3515
-
Leu
TAG
[ENA]
¢þ
>C181058211
CP022106
Bacillota
Halobacillus halophilus HL2HP6 [CP022106]
103965
104047
+
Leu
TAG
-
¡û
>C181058235
CP022106
Bacillota
Halobacillus halophilus HL2HP6 [CP022106]
406926
407008
+
Leu
TAG
-
¡û
>C191040542
CP026118
Bacillota
Halobacillus litoralis ERB 031 [CP026118]
2163366
2163284
-
Leu
TAG
-
¡û
>C191040566
CP026118
Bacillota
Halobacillus litoralis ERB 031 [CP026118]
1859427
1859345
-
Leu
TAG
-
¡û
>W1910227923
FNMN01000002
Bacillota
Bacillus sp. ES3 [FNMN]
636358
636441
+
Leu
TAG
[ENA]
¡û
>W1910228003
FNMN01000010
Bacillota
Bacillus sp. ES3 [FNMN]
702
620
-
Leu
TAG
[ENA]
¡û
>W1910399461
FUVA01000022
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
403270
403188
-
Leu
TAG
[ENA]
¡û
>W1910399470
FUVA01000022
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
397312
397231
-
Leu
TAG
[ENA]
¡û
>W1910399482
FUVA01000022
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
394721
394639
-
Leu
TAG
[ENA]
¡û
>W1910399493
FUVA01000023
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
11716
11635
-
Leu
TAG
[ENA]
¡û
>W1910399503
FUVA01000023
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
5722
5641
-
Leu
TAG
[ENA]
¡û
>W1910399515
FUVA01000024
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
476
395
-
Leu
TAG
[ENA]
¡û
>W1910437722
FVYZ01000002
Bacillota
Halobacillus salinus Marseille-P2480 [FVYZ]
316998
316916
-
Leu
TAG
[ENA]
¡û
>W1910437746
FVYZ01000002
Bacillota
Halobacillus salinus Marseille-P2480 [FVYZ]
2340
2258
-
Leu
TAG
[ENA]
¡û
>W1910437859
FVZB01000001
Bacillota
Halobacillus hunanensis Marseille-P3457 [FVZB]
269
350
+
Leu
TAG
[ENA]
¡û
>W1910437885
FVZB01000005
Bacillota
Halobacillus hunanensis Marseille-P3457 [FVZB]
310886
310968
+
Leu
TAG
[ENA]
¡û
>W1911504069
OESS01000004
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
1126
1044
-
Leu
TAG
[ENA]
¡û
>W1911504080
OESS01000009
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
795
876
+
Leu
TAG
[ENA]
¡û
>W1810869886
QUAE01000029
Bacillota
Halobacillus trueperi KCTC 3686 [QUAE]
35190
35273
+
Leu
TAG
[ENA]
¡û
>W1810869897
QUAE01000049
Bacillota
Halobacillus trueperi KCTC 3686 [QUAE]
688
770
+
Leu
TAG
[ENA]
¡û
>C151050346
CP009416
Bacillota
Jeotgalibacillus malaysiensis D5 [CP009416]
105321
105405
+
Leu
TAG
[Ensembl]
¡û
>C151050370
CP009416
Bacillota
Jeotgalibacillus malaysiensis D5 [CP009416]
739015
739098
+
Leu
TAG
[Ensembl]
¡û
>C151050400
CP009416
Bacillota
Jeotgalibacillus malaysiensis D5 [CP009416]
2375065
2374981
-
Leu
TAG
[Ensembl]
¡û
>W1511352131
JRNX01000914
Bacillota
Halobacillus sp. BBL2006 [JRNX]
182
100
-
Leu
TAG
[ENA]
¡û
>W1511509983
JXRQ01000004
Bacillota
Jeotgalibacillus alimentarius YKJ-13 [JXRQ]
482
566
+
Leu
TAG
[ENA]
¡û
>W1511510006
JXRQ01000012
Bacillota
Jeotgalibacillus alimentarius YKJ-13 [JXRQ]
49378
49461
+
Leu
TAG
[ENA]
¡û
>W1511510029
JXRQ01000023
Bacillota
Jeotgalibacillus alimentarius YKJ-13 [JXRQ]
1654
1570
-
Leu
TAG
[ENA]
¡û
>C121018404
HE717023
Bacillota
Halobacillus halophilus DSM 2266 type strain: DSM 2266 [HE717023]
104035
104117
+
Leu
TAG
[Ensembl]
¡û
>C121018428
HE717023
Bacillota
Halobacillus halophilus DSM 2266 type strain: DSM 2266 [HE717023]
406996
407078
+
Leu
TAG
[Ensembl]
¡û
>W1610918357
LSOC01000001
Bacillota
Halobacillus sp. KGW1 [LSOC]
582
665
+
Leu
TAG
[ENA]
¡û
>W1610918400
LSOC01000005
Bacillota
Halobacillus sp. KGW1 [LSOC]
730
648
-
Leu
TAG
[ENA]
¡û
>W1710524774
FNIZ01000026
Bacillota
Halobacillus aidingensis [FNIZ]
57781
57864
+
Leu
TAG
[ENA]
¡û
>W1710540516
FNWW01000011
Bacillota
Halobacillus karajensis [FNWW]
100095
100178
+
Leu
TAG
[ENA]
¡û
>W1710540525
FNWW01000011
Bacillota
Halobacillus karajensis [FNWW]
101293
101375
+
Leu
TAG
[ENA]
¡û
>W1710561572
FOOG01000021
Bacillota
Halobacillus alkaliphilus [FOOG]
985
903
-
Leu
TAG
[ENA]
¡û
>W1710566576
FOSB01000012
Bacillota
Halobacillus dabanensis [FOSB]
1757
1675
-
Leu
TAG
[ENA]
¡û
>W1710566585
FOSB01000012
Bacillota
Halobacillus dabanensis [FOSB]
634
552
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK