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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101766 (138 seq.)
>W1711581256
MNTW01000006
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
120521
120436
-
Tyr
GTA
[ENA]
¡û
>C171129795
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1166234
1166319
+
Tyr
GTA
-
¡û
>W131215409
ATUZ01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
149379
149294
-
Tyr
GTA
[ENA]
¡û
>W131106837
APFI01000075
Thermodesulfobacteriota
Desulfovibrio sp. Dsv1 [APFI]
16611
16526
-
Tyr
GTA
[ENA]
¡û
>WENV180220997
OBAX01002562
[OBAX] human gut metagenome; human gut
1872
1787
-
Tyr
GTA
[ENA]
¢þ
>WENV180223311
OBBG01001600
[OBBG] human gut metagenome; human gut
117
202
+
Tyr
GTA
[ENA]
¢þ
>WENV180223676
OBBH01003628
[OBBH] human gut metagenome; human gut
127
212
+
Tyr
GTA
[ENA]
¢þ
>WENV180274670
OBHE01006625
[OBHE] human gut metagenome; human gut
1185
1100
-
Tyr
GTA
[ENA]
¢þ
>WENV180323561
OBKR01044073
[OBKR] human gut metagenome; feces
533
448
-
Tyr
GTA
[ENA]
¢þ
>WENV180534523
OCHM01014211
[OCHM] human gut metagenome; human gut
1679
1764
+
Tyr
GTA
[ENA]
¢þ
>WENV180544056
OCIP01000524
[OCIP] human gut metagenome; human gut
1290
1375
+
Tyr
GTA
[ENA]
¢þ
>WENV180544415
OCIQ01003736
[OCIQ] human gut metagenome; human gut
20
105
+
Tyr
GTA
[ENA]
¢þ
>WENV180627973
OCQO01008103
[OCQO] human gut metagenome; human gut
1839
1754
-
Tyr
GTA
[ENA]
¢þ
>WENV180761970
ODHZ01043134
[ODHZ] human metagenome; G_DNA_Stool
200
285
+
Tyr
GTA
[ENA]
¢þ
>WENV180785434
ODIR01009857
[ODIR] human metagenome; G_DNA_Stool
1042
1127
+
Tyr
GTA
[ENA]
¢þ
>WENV180905781
ODPF01105124
[ODPF] human metagenome; G_DNA_Stool
254
339
+
Tyr
GTA
[ENA]
¢þ
>WENV181116495
OEFA01009561
[OEFA] human gut metagenome; human gut
422
507
+
Tyr
GTA
[ENA]
¢þ
>WENV181332810
OFMA01007327
[OFMA] human gut metagenome; human gut
3345
3430
+
Tyr
GTA
[ENA]
¢þ
>WENV181446152
OGDS01082226
[OGDS] metagenome; Human gut stool
203
288
+
Tyr
GTA
[ENA]
¢þ
>WENV181451212
OGDY01003342
[OGDY] metagenome; Human gut stool
1845
1760
-
Tyr
GTA
[ENA]
¢þ
>WENV181460856
OGEL01082227
[OGEL] metagenome; Human gut stool
203
288
+
Tyr
GTA
[ENA]
¢þ
>WENV181482757
OGFJ01048261
[OGFJ] metagenome; Human gut stool
320
235
-
Tyr
GTA
[ENA]
¢þ
>WENV181503975
OGGJ01016474
[OGGJ] metagenome; Human gut stool
2089
2004
-
Tyr
GTA
[ENA]
¢þ
>WENV181505457
OGGK01020384
[OGGK] metagenome; Human gut stool
1589
1504
-
Tyr
GTA
[ENA]
¢þ
>WENV181525086
OGHJ01000008
[OGHJ] metagenome; Human gut stool
159526
159611
+
Tyr
GTA
[ENA]
¢þ
>WENV181578127
OGJY01000406
[OGJY] metagenome; Human gut stool
47121
47206
+
Tyr
GTA
[ENA]
¢þ
>WENV181603200
OGLH01025865
[OGLH] metagenome; Human gut stool
499
584
+
Tyr
GTA
[ENA]
¢þ
>WENV181621530
OGMF01007778
[OGMF] metagenome; Human gut stool
871
956
+
Tyr
GTA
[ENA]
¢þ
>WENV181631500
OGMR01047154
[OGMR] metagenome; Human gut stool
252
167
-
Tyr
GTA
[ENA]
¢þ
>WENV181637067
OGNB01000954
[OGNB] metagenome; Human gut stool
8722
8637
-
Tyr
GTA
[ENA]
¢þ
>WENV181641456
OGNF01004367
[OGNF] metagenome; Human gut stool
7729
7814
+
Tyr
GTA
[ENA]
¢þ
>WENV181669441
OGOL01033857
[OGOL] human gut metagenome; faeces
439
524
+
Tyr
GTA
[ENA]
¢þ
>WENV181676108
OGOP01033806
[OGOP] human gut metagenome; faeces
628
543
-
Tyr
GTA
[ENA]
¢þ
>WENV181677929
OGOQ01024312
[OGOQ] human gut metagenome; faeces
1597
1512
-
Tyr
GTA
[ENA]
¢þ
>WENV181688378
OGOX01039385
[OGOX] human gut metagenome; faeces
678
593
-
Tyr
GTA
[ENA]
¢þ
>WENV181710326
OGPN01059098
[OGPN] human gut metagenome; faeces
551
466
-
Tyr
GTA
[ENA]
¢þ
>WENV181714941
OGPR01011403
[OGPR] human gut metagenome; faeces
1079
1164
+
Tyr
GTA
[ENA]
¢þ
>WENV181718829
OGPT01058686
[OGPT] human gut metagenome; faeces
693
608
-
Tyr
GTA
[ENA]
¢þ
>WENV181728149
OGQA01021022
[OGQA] human gut metagenome; faeces
164
249
+
Tyr
GTA
[ENA]
¢þ
>WENV181747627
OGQN01070356
[OGQN] human gut metagenome; faeces
246
161
-
Tyr
GTA
[ENA]
¢þ
>WENV181751317
OGQP01047294
[OGQP] human gut metagenome; faeces
482
567
+
Tyr
GTA
[ENA]
¢þ
>WENV181765875
OGQY01072008
[OGQY] human gut metagenome; faeces
62
147
+
Tyr
GTA
[ENA]
¢þ
>WENV181767652
OGQZ01102091
[OGQZ] human gut metagenome; faeces
329
244
-
Tyr
GTA
[ENA]
¢þ
>WENV181865570
OGWU01042370
[OGWU] human gut metagenome; faeces
415
500
+
Tyr
GTA
[ENA]
¢þ
>WENV181874540
OGXA01032902
[OGXA] human gut metagenome; faeces
813
728
-
Tyr
GTA
[ENA]
¢þ
>WENV181877438
OGXD01008686
[OGXD] human gut metagenome; faeces
87
172
+
Tyr
GTA
[ENA]
¢þ
>WENV181885491
OGXJ01024482
[OGXJ] human gut metagenome; faeces
627
712
+
Tyr
GTA
[ENA]
¢þ
>WENV181893707
OGXQ01004763
[OGXQ] human gut metagenome; faeces
1115
1030
-
Tyr
GTA
[ENA]
¢þ
>WENV181898244
OGXT01003115
[OGXT] human gut metagenome; faeces
2314
2399
+
Tyr
GTA
[ENA]
¢þ
>WENV181902684
OGXW01069384
[OGXW] human gut metagenome; faeces
27
112
+
Tyr
GTA
[ENA]
¢þ
>WENV181902900
OGXX01000083
[OGXX] human gut metagenome; faeces
66533
66618
+
Tyr
GTA
[ENA]
¢þ
>WENV181907012
OGXZ01018649
[OGXZ] human gut metagenome; faeces
1603
1518
-
Tyr
GTA
[ENA]
¢þ
>WENV181909273
OGYB01038826
[OGYB] human gut metagenome; faeces
301
386
+
Tyr
GTA
[ENA]
¢þ
>WENV181913221
OGYE01004303
[OGYE] human gut metagenome; faeces
1732
1647
-
Tyr
GTA
[ENA]
¢þ
>WENV181929532
OGYO01031516
[OGYO] human gut metagenome; faeces
165
80
-
Tyr
GTA
[ENA]
¢þ
>WENV181937371
OGYV01066855
[OGYV] human gut metagenome; faeces
240
155
-
Tyr
GTA
[ENA]
¢þ
>WENV181942604
OGYZ01000542
[OGYZ] human gut metagenome; faeces
757
672
-
Tyr
GTA
[ENA]
¢þ
>WENV181953714
OGZI01020344
[OGZI] human gut metagenome; faeces
856
771
-
Tyr
GTA
[ENA]
¢þ
>WENV181955457
OGZK01003447
[OGZK] human gut metagenome; faeces
1924
1839
-
Tyr
GTA
[ENA]
¢þ
>WENV181960394
OGZO01000030
[OGZO] human gut metagenome; faeces
40210
40295
+
Tyr
GTA
[ENA]
¢þ
>WENV181973252
OHAA01020570
[OHAA] human gut metagenome; faeces
690
605
-
Tyr
GTA
[ENA]
¢þ
>WENV181980543
OHAF01051252
[OHAF] human gut metagenome; faeces
835
750
-
Tyr
GTA
[ENA]
¢þ
>WENV181984708
OHAI01042015
[OHAI] human gut metagenome; faeces
509
594
+
Tyr
GTA
[ENA]
¢þ
>WENV181985099
OHAJ01000701
[OHAJ] human gut metagenome; faeces
24272
24357
+
Tyr
GTA
[ENA]
¢þ
>WENV181991496
OHAQ01002904
[OHAQ] human gut metagenome; faeces
905
990
+
Tyr
GTA
[ENA]
¢þ
>WENV181995617
OHAT01005188
[OHAT] human gut metagenome; faeces
5207
5292
+
Tyr
GTA
[ENA]
¢þ
>WENV182009615
OHBJ01025887
[OHBJ] human gut metagenome; faeces
1452
1367
-
Tyr
GTA
[ENA]
¢þ
>WENV182011535
OHBM01001564
[OHBM] human gut metagenome; faeces
10347
10262
-
Tyr
GTA
[ENA]
¢þ
>W141201068
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
785586
785671
+
Tyr
GTA
[ENA]
¡û
>WENV182166546
OHMP01024762
[OHMP] human gut metagenome; feces
526
611
+
Tyr
GTA
[ENA]
¢þ
>WENV182199966
OHPK01016578
[OHPK] human gut metagenome; feces
612
527
-
Tyr
GTA
[ENA]
¢þ
>WENV182208503
OHPX01019053
[OHPX] human gut metagenome; feces
481
566
+
Tyr
GTA
[ENA]
¢þ
>WENV182249233
OHSP01031454
[OHSP] human gut metagenome; feces
293
208
-
Tyr
GTA
[ENA]
¢þ
>WENV182510070
OIWK01000590
[OIWK] human gut metagenome; faeces
32523
32438
-
Tyr
GTA
[ENA]
¢þ
>WENV182537530
OIXH01009622
[OIXH] human gut metagenome; faeces
599
684
+
Tyr
GTA
[ENA]
¢þ
>WENV182596041
OJIY01000442
[OJIY] metagenome; faeces
11661
11576
-
Tyr
GTA
[ENA]
¢þ
>WENV182655317
OJMI01028560
[OJMI] human gut metagenome; feces
565
650
+
Tyr
GTA
[ENA]
¢þ
>WENV182684219
OJNX01056634
[OJNX] human gut metagenome; human gut
161
246
+
Tyr
GTA
[ENA]
¢þ
>WENV182699593
OJON01067813
[OJON] human gut metagenome; human gut
574
489
-
Tyr
GTA
[ENA]
¢þ
>WENV182720238
OJPN01005607
[OJPN] human gut metagenome; stool sample
6
91
+
Tyr
GTA
[ENA]
¢þ
>WENV182727685
OJPW01000086
[OJPW] human gut metagenome; stool sample
5107
5022
-
Tyr
GTA
[ENA]
¢þ
>WENV182732098
OJQA01036905
[OJQA] human gut metagenome; stool sample
201
116
-
Tyr
GTA
[ENA]
¢þ
>WENV182869702
OKRT01015100
[OKRT] human gut metagenome; faeces
1254
1169
-
Tyr
GTA
[ENA]
¢þ
>WENV182881021
OKSA01002890
[OKSA] human gut metagenome; faeces
12561
12646
+
Tyr
GTA
[ENA]
¢þ
>WENV182882562
OKSB01000766
[OKSB] human gut metagenome; faeces
23202
23287
+
Tyr
GTA
[ENA]
¢þ
>WENV182888967
OKSE01015027
[OKSE] human gut metagenome; faeces
920
1005
+
Tyr
GTA
[ENA]
¢þ
>WENV182891877
OKSH01006340
[OKSH] human gut metagenome; faeces
117
202
+
Tyr
GTA
[ENA]
¢þ
>WENV183028812
OLFV01008911
[OLFV] human gut metagenome; faeces
2347
2432
+
Tyr
GTA
[ENA]
¢þ
>WENV183029645
OLFW01001012
[OLFW] human gut metagenome; faeces
16925
17010
+
Tyr
GTA
[ENA]
¢þ
>WENV183032641
OLFY01000389
[OLFY] human gut metagenome; faeces
63092
63177
+
Tyr
GTA
[ENA]
¢þ
>WENV183034298
OLFZ01000008
[OLFZ] human gut metagenome; faeces
215233
215148
-
Tyr
GTA
[ENA]
¢þ
>WENV183037172
OLGA01009961
[OLGA] human gut metagenome; faeces
164
249
+
Tyr
GTA
[ENA]
¢þ
>WENV183223588
OLQM01037552
[OLQM] human gut metagenome; faeces
852
937
+
Tyr
GTA
[ENA]
¢þ
>WENV183258507
OLRN01007445
[OLRN] human gut metagenome; faeces
2829
2744
-
Tyr
GTA
[ENA]
¢þ
>WENV183269877
OLRV01001855
[OLRV] human gut metagenome; faeces
3908
3823
-
Tyr
GTA
[ENA]
¢þ
>WENV183324674
OLVY01037265
[OLVY] human gut metagenome; feces
219
134
-
Tyr
GTA
[ENA]
¢þ
>WENV183331212
OLWB01069799
[OLWB] human gut metagenome; faeces
586
671
+
Tyr
GTA
[ENA]
¢þ
>WENV183339033
OLWK01009058
[OLWK] human gut metagenome; feces
139
224
+
Tyr
GTA
[ENA]
¢þ
>WENV183340127
OLWL01003404
[OLWL] human gut metagenome; feces
1014
929
-
Tyr
GTA
[ENA]
¢þ
>WENV183432808
OMBR01043124
[OMBR] human gut metagenome; feces
336
251
-
Tyr
GTA
[ENA]
¢þ
>WENV183488503
OMFY01056260
[OMFY] human gut metagenome; feces
74
159
+
Tyr
GTA
[ENA]
¢þ
>WENV183493084
OMGI01006154
[OMGI] human gut metagenome; human gut
3357
3442
+
Tyr
GTA
[ENA]
¢þ
>WENV183501342
OMGS01000078
[OMGS] human gut metagenome; human gut
14684
14599
-
Tyr
GTA
[ENA]
¢þ
>WENV183505400
OMGX01002276
[OMGX] human gut metagenome; human gut
5850
5935
+
Tyr
GTA
[ENA]
¢þ
>WENV183540265
OOAJ01007125
[OOAJ] human gut metagenome; human gut
204
289
+
Tyr
GTA
[ENA]
¢þ
>WENV183545645
OOAQ01012580
[OOAQ] human gut metagenome; human gut
488
403
-
Tyr
GTA
[ENA]
¢þ
>WENV183574538
OOCH01023568
[OOCH] human gut metagenome; human gut
1211
1296
+
Tyr
GTA
[ENA]
¢þ
>WENV183575179
OOCI01000588
[OOCI] human gut metagenome; human gut
1189
1104
-
Tyr
GTA
[ENA]
¢þ
>WENV183579233
OOCM01000370
[OOCM] human gut metagenome; human gut
23300
23215
-
Tyr
GTA
[ENA]
¢þ
>WENV183597742
OODF01003633
[OODF] human gut metagenome; human gut
2864
2949
+
Tyr
GTA
[ENA]
¢þ
>WENV183601091
OODJ01000234
[OODJ] human gut metagenome; human gut
4991
4906
-
Tyr
GTA
[ENA]
¢þ
>WENV183603832
OODL01000304
[OODL] human gut metagenome; human gut
5431
5346
-
Tyr
GTA
[ENA]
¢þ
>WENV183632891
OOIF01033176
[OOIF] human gut metagenome; human gut
763
678
-
Tyr
GTA
[ENA]
¢þ
>WENV183634012
OOIG01006174
[OOIG] human gut metagenome; human gut
4967
4882
-
Tyr
GTA
[ENA]
¢þ
>WENV183639711
OQVI01044120
[OQVI] human gut metagenome; human gut
586
671
+
Tyr
GTA
[ENA]
¢þ
>WENV183776151
PPYF01083712
[PPYF] human gut metagenome; stool from patient with Crohn's disease
480
395
-
Tyr
GTA
[ENA]
¢þ
>WENV183786973
PPYF01309611
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5157
5072
-
Tyr
GTA
[ENA]
¢þ
>WENV183788960
PPYF01372018
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3558
3643
+
Tyr
GTA
[ENA]
¢þ
>WENV170057521
CDZG01041007
[CDZG] gut metagenome; human stools
556
471
-
Tyr
GTA
[ENA]
¢þ
>WENV170077039
CDZU01019608
[CDZU] gut metagenome; human stools
845
760
-
Tyr
GTA
[ENA]
¢þ
>WENV170078475
CDZV01026721
[CDZV] gut metagenome; human stools
251
336
+
Tyr
GTA
[ENA]
¢þ
>WENV170091110
CEAF01071302
[CEAF] gut metagenome; human stools
1169
1084
-
Tyr
GTA
[ENA]
¢þ
>WENV170111045
CECF01057056
[CECF] gut metagenome; human stools
616
531
-
Tyr
GTA
[ENA]
¢þ
>W09112335
ABXU01000003
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
23335
23250
-
Tyr
GTA
[ENA]
¡û
>W09118227
ACCT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
83001
82916
-
Tyr
GTA
[ENA]
¡û
>C181081079
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
1056290
1056205
-
Tyr
GTA
-
¡û
>C191149688
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
2180555
2180640
+
Tyr
GTA
-
¡û
>W1910020676
BDUJ01000003
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
22551
22636
+
Tyr
GTA
[ENA]
¡û
>C09103838
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1955379
1955464
+
Tyr
GTA
[Ensembl]
¡û
>C09104376
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
1769889
1769974
+
Tyr
GTA
[Ensembl]
¡û
>W1810792949
QRJJ01000019
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
14996
14911
-
Tyr
GTA
[ENA]
¡û
>W10111707
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34416
34501
+
Tyr
GTA
[ENA]
¡û
>W11106997
ACWM01000018
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
47654
47739
+
Tyr
GTA
[ENA]
¡û
>W11114634
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34416
34501
+
Tyr
GTA
[ENA]
¡û
>W11178814
AGFG01000034
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
42893
42978
+
Tyr
GTA
[ENA]
¡û
>C161069006
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
867767
867682
-
Tyr
GTA
[Ensembl]
¡û
>W1710515578
FNBX01000001
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
244000
243915
-
Tyr
GTA
[ENA]
¡û
>W1710579858
FPIW01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
5864
5779
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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