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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101826 (65 seq.)
>W1710797225
LJSW01000015
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
42845
42929
+
Leu
TAG
[ENA]
¡û
>W1710867169
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
1014823
1014739
-
Leu
TAG
[ENA]
¡û
>W1710868111
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2108854
2108770
-
Leu
TAG
[ENA]
¡û
>W1711051698
LRSE01000005
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
77828
77912
+
Leu
TAG
[ENA]
¡û
>W1711253274
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
372722
372806
+
Leu
TAG
[ENA]
¡û
>W1711261698
LYWY01000040
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
187982
187898
-
Leu
TAG
[ENA]
¡û
>W1711261704
LYWZ01000002
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
145369
145285
-
Leu
TAG
[ENA]
¡û
>W1711386361
MEFG01000017
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
102137
102053
-
Leu
TAG
[ENA]
¡û
>W1711506410
MKWJ01000023
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
279252
279168
-
Leu
TAG
[ENA]
¡û
>W1712049839
NFUR01000002
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
591262
591346
+
Leu
TAG
[ENA]
¡û
>C171047031
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
323316
323400
+
Leu
TAG
-
¡û
>C171095044
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
301462
301546
+
Leu
TAG
-
¡û
>C171096142
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
372722
372806
+
Leu
TAG
-
¡û
>W131214352
ATTZ01000127
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-C18 [ATTZ]
2547
2631
+
Leu
TAG
[ENA]
¡û
>WENV180100138
OAOK01000035
[OAOK] sediment metagenome; sediment
72183
72099
-
Leu
TAG
[ENA]
¢þ
>WENV180100414
OAON01001102
[OAON] sediment metagenome; sediment
550
466
-
Leu
TAG
[ENA]
¢þ
>WENV180355066
OBNG01002083
[OBNG] sediment metagenome; sediment
1953
1869
-
Leu
TAG
[ENA]
¢þ
>WENV180355260
OBNH01000107
[OBNH] sediment metagenome; sediment
35201
35117
-
Leu
TAG
[ENA]
¢þ
>WENV180355528
OBNI01000255
[OBNI] sediment metagenome; sediment
3974
4058
+
Leu
TAG
[ENA]
¢þ
>WENV180355801
OBNJ01000542
[OBNJ] sediment metagenome; sediment
757
841
+
Leu
TAG
[ENA]
¢þ
>WENV180356242
OBNK01004095
[OBNK] sediment metagenome; sediment
755
671
-
Leu
TAG
[ENA]
¢þ
>WENV181233886
OFET01000213
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
42869
42953
+
Leu
TAG
[ENA]
¢þ
>WENV181234516
OFEU01000247
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
5211
5127
-
Leu
TAG
[ENA]
¢þ
>WENV181402676
OFTY01016565
[OFTY] sludge metagenome; sludge
877
961
+
Leu
TAG
[ENA]
¢þ
>WENV183666985
ORJL010602368
[ORJL] groundwater metagenome; groundwater
1169
1253
+
Leu
TAG
[ENA]
¢þ
>WENV183727036
PJTO01002134
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
2019
1935
-
Leu
TAG
[ENA]
¢þ
>WENV183727456
PJTP01000002
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
595249
595165
-
Leu
TAG
[ENA]
¢þ
>WENV183728251
PJTQ01000005
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
595250
595166
-
Leu
TAG
[ENA]
¢þ
>WENV183733470
PJTY01002530
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3263
3347
+
Leu
TAG
[ENA]
¢þ
>WENV183733893
PJTZ01000001
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1102887
1102971
+
Leu
TAG
[ENA]
¢þ
>WENV183736720
PJUD01000004
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
595250
595166
-
Leu
TAG
[ENA]
¢þ
>WENV183737747
PJUD01028127
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
838
754
-
Leu
TAG
[ENA]
¢þ
>WENV183738498
PJUE01000006
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
595250
595166
-
Leu
TAG
[ENA]
¢þ
>WENV183739748
PJUF01000005
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
595250
595166
-
Leu
TAG
[ENA]
¢þ
>WENV183743704
PJUJ01026339
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
328
244
-
Leu
TAG
[ENA]
¢þ
>WENV183744979
PJUL01001030
[PJUL] feces metagenome; Chicken feces enriched on filter paper
4195
4111
-
Leu
TAG
[ENA]
¢þ
>WENV170003864
AGTN01477947
[AGTN] bioreactor metagenome; poplar biomass
383
299
-
Leu
TAG
[ENA]
¢þ
>WENV170004225
AGTN01609975
[AGTN] bioreactor metagenome; poplar biomass
78
162
+
Leu
TAG
[ENA]
¢þ
>WENV170004312
AGTN01634052
[AGTN] bioreactor metagenome; poplar biomass
350
266
-
Leu
TAG
[ENA]
¢þ
>WENV170176079
CEOS01036333
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9215
9131
-
Leu
TAG
[ENA]
¢þ
>WENV170277995
CERQ01043095
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19374
19290
-
Leu
TAG
[ENA]
¢þ
>WENV170555433
CXWL01000586
[CXWL] groundwater metagenome; biofilm material
25957
25873
-
Leu
TAG
[ENA]
¢þ
>WENV170555695
CXWL01001801
[CXWL] groundwater metagenome; biofilm material
4113
4197
+
Leu
TAG
[ENA]
¢þ
>C181108613
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
249520
249604
+
Leu
TAG
-
¡û
>W141779847
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
1005012
1004928
-
Leu
TAG
[ENA]
¡û
>W1911752773
QWLV01000006
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
174962
175046
+
Leu
TAG
[ENA]
¡û
>W1911802700
QYUM01000003
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
1586073
1585989
-
Leu
TAG
[ENA]
¡û
>W1810577290
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
311812
311896
+
Leu
TAG
[ENA]
¡û
>W1810586266
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
2655124
2655208
+
Leu
TAG
[ENA]
¡û
>C151073216
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
2664958
2664874
-
Leu
TAG
[Ensembl]
¡û
>C151096921
CP012669
Alphaproteobacteria
Altererythrobacter epoxidivorans CGMCC 1.7731 [CP012669]
1943611
1943527
-
Leu
TAG
-
¡û
>W1510012839
BBNP01000043
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
151074
151158
+
Leu
TAG
[ENA]
¡û
>W1511581094
LARW01000046
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
10599
10683
+
Leu
TAG
[ENA]
¡û
>W11167334
AFMP01000008
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
51781
51697
-
Leu
TAG
[ENA]
¡û
>W1610071309
BCTZ01000001
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
273487
273571
+
Leu
TAG
[ENA]
¡û
>W1610661182
LJSW01000015
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
42845
42929
+
Leu
TAG
[ENA]
¡û
>W1610729515
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
1014823
1014739
-
Leu
TAG
[ENA]
¡û
>W1610730457
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2108854
2108770
-
Leu
TAG
[ENA]
¡û
>W1610892827
LRSE01000005
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
77828
77912
+
Leu
TAG
[ENA]
¡û
>WENV077380
AAFX01028800
Soil microbial communities from Minnesota Farm
644
558
-
Leu
TAG
[ENA]
>W1611017811
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
372722
372806
+
Leu
TAG
[ENA]
¡û
>W1611023673
LYWY01000040
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
187982
187898
-
Leu
TAG
[ENA]
¡û
>W1611023679
LYWZ01000002
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
145369
145285
-
Leu
TAG
[ENA]
¡û
>W1710068674
BCTZ01000001
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
273487
273571
+
Leu
TAG
[ENA]
¡û
>W1710512376
FMZJ01000004
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
52694
52610
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK