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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10203 (8 seq.)
>WENV180251460
OBEQ010367911
[OBEQ] groundwater metagenome; groundwater
1332
1423
+
Ser
GGA
[ENA]
¢þ
>WENV180252662
OBEQ010469165
[OBEQ] groundwater metagenome; groundwater
16592
16683
+
Ser
GGA
[ENA]
¢þ
>WENV180253358
OBEQ010532456
[OBEQ] groundwater metagenome; groundwater
64
156
+
Ser
GGA
[ENA]
¢þ
>WENV180256287
OBEQ010802446
[OBEQ] groundwater metagenome; groundwater
15
106
+
Ser
GGA
[ENA]
¢þ
>WENV180260344
OBEQ011192313
[OBEQ] groundwater metagenome; groundwater
894
803
-
Ser
GGA
[ENA]
¢þ
>WENV180262538
OBEQ011395838
[OBEQ] groundwater metagenome; groundwater
1140
1048
-
Ser
GGA
[ENA]
¢þ
>WENV183682152
ORMF010403367
[ORMF] groundwater metagenome; groundwater
5576
5667
+
Ser
GGA
[ENA]
¢þ
>WENV183694528
ORMF012246161
[ORMF] groundwater metagenome; groundwater
3552
3641
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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