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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102100 (71 seq.)
>W1710863405
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
1839977
1839894
-
Leu
GAG
[ENA]
¡û
>W1710863617
LMFG01000003
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
63627
63710
+
Leu
GAG
[ENA]
¡û
>W1710868740
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3396921
3396838
-
Leu
GAG
[ENA]
¡û
>W1710875678
LMOO01000010
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
3010
2927
-
Leu
GAG
[ENA]
¡û
>W1710877720
LMQI01000005
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
939823
939740
-
Leu
GAG
[ENA]
¡û
>W1710878858
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1225586
1225669
+
Leu
GAG
[ENA]
¡û
>W1710878859
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1227244
1227327
+
Leu
GAG
[ENA]
¡û
>W1711134985
LUYL01000009
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
38912
38829
-
Leu
GAG
[ENA]
¡û
>W1711138020
LVCF01000035
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
245839
245756
-
Leu
GAG
[ENA]
¡û
>C171131341
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
2435704
2435621
-
Leu
GAG
-
¡û
>W131227060
AUEW01000001
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
78860
78943
+
Leu
GAG
[ENA]
¡û
>WENV181401914
OFTX01020587
[OFTX] sludge metagenome; sludge
736
653
-
Leu
GAG
[ENA]
¢þ
>W141153003
AXCW01000034
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
27377
27294
-
Leu
GAG
[ENA]
¡û
>WENV183704063
PDWI01000016
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
165030
165113
+
Leu
GAG
[ENA]
¢þ
>WENV183719665
PDWJ01018158
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4439
4356
-
Leu
GAG
[ENA]
¢þ
>WENV183720436
PDWJ01034417
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7
90
+
Leu
GAG
[ENA]
¢þ
>WENV183726897
PJTO01000408
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
880
797
-
Leu
GAG
[ENA]
¢þ
>WENV183728163
PJTP01052418
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
119
202
+
Leu
GAG
[ENA]
¢þ
>WENV183728395
PJTQ01000040
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
160051
160134
+
Leu
GAG
[ENA]
¢þ
>WENV183729705
PJTR01000024
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
99393
99310
-
Leu
GAG
[ENA]
¢þ
>WENV183731591
PJTT01000042
[PJTT] soil metagenome; Soil (2) enriched on wood chips
99393
99310
-
Leu
GAG
[ENA]
¢þ
>WENV183731928
PJTU01000011
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
99393
99310
-
Leu
GAG
[ENA]
¢þ
>WENV183732232
PJTW01000016
[PJTW] soil metagenome; Soil enriched on wood chips
17569
17652
+
Leu
GAG
[ENA]
¢þ
>WENV183734973
PJUA01000302
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
14959
15042
+
Leu
GAG
[ENA]
¢þ
>WENV183736344
PJUC01000947
[PJUC] soil metagenome; Soil enriched on filter paper
5356
5439
+
Leu
GAG
[ENA]
¢þ
>WENV183737392
PJUD01006141
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2922
2839
-
Leu
GAG
[ENA]
¢þ
>WENV183739828
PJUF01000024
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
99399
99316
-
Leu
GAG
[ENA]
¢þ
>WENV183743077
PJUJ01000024
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
99393
99310
-
Leu
GAG
[ENA]
¢þ
>WENV183744608
PJUL01000030
[PJUL] feces metagenome; Chicken feces enriched on filter paper
99393
99310
-
Leu
GAG
[ENA]
¢þ
>WENV183749715
PPFU01202641
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1453
1370
-
Leu
GAG
[ENA]
¢þ
>W141428863
JEOE01000001
Actinomycetota
Cellulomonas sp. HZM [JEOE]
320622
320705
+
Leu
GAG
[ENA]
¡û
>WENV170700448
LIDZ01013979
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
522
439
-
Leu
GAG
[ENA]
¢þ
>C181052435
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
900584
900501
-
Leu
GAG
-
¡û
>C181078626
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
2435726
2435643
-
Leu
GAG
-
¡û
>C191026503
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
2314260
2314177
-
Leu
GAG
-
¡û
>C191164672
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1642918
1643001
+
Leu
GAG
-
¡û
>C191210051
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1920048
1920131
+
Leu
GAG
-
¡û
>W141564171
JIAN01000010
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
131193
131110
-
Leu
GAG
[ENA]
¡û
>W141758691
JNYT01005733
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
1001
1084
+
Leu
GAG
[ENA]
¡û
>W1910129178
BHYL01000093
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
24562
24479
-
Leu
GAG
[ENA]
¡û
>W1910155486
BIMR01000204
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
5022
5105
+
Leu
GAG
[ENA]
¡û
>W1910181034
BJLP01000011
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
20452
20369
-
Leu
GAG
[ENA]
¡û
>W1910181071
BJLQ01000002
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
160262
160345
+
Leu
GAG
[ENA]
¡û
>W1910181162
BJLR01000045
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
60812
60895
+
Leu
GAG
[ENA]
¡û
>W1910547345
FZNR01000016
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
166532
166615
+
Leu
GAG
[ENA]
¡û
>W1810568797
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
2764779
2764862
+
Leu
GAG
[ENA]
¡û
>W1810594916
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
1291662
1291745
+
Leu
GAG
[ENA]
¡û
>W1810918537
QWKP01000189
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
19642
19725
+
Leu
GAG
[ENA]
¡û
>W10100650
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
100189
100106
-
Leu
GAG
[ENA]
¡û
>W10100651
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
99146
99063
-
Leu
GAG
[ENA]
¡û
>C10111723
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
2357517
2357600
+
Leu
GAG
[Ensembl]
¡û
>C10111724
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
2358560
2358643
+
Leu
GAG
[Ensembl]
¡û
>W11100650
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
100189
100106
-
Leu
GAG
[ENA]
¡û
>W11100651
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
99146
99063
-
Leu
GAG
[ENA]
¡û
>C11105022
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1920026
1920109
+
Leu
GAG
[Ensembl]
¡û
>C11105125
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
2019826
2019909
+
Leu
GAG
[Ensembl]
¡û
>W1511683481
LFKW01000133
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
29596
29679
+
Leu
GAG
[ENA]
¡û
>C121007291
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
2435661
2435578
-
Leu
GAG
[Ensembl]
¡û
>W1610207217
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
1027676
1027591
-
Leu
GAG
[ENA]
¡û
>W1610725751
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
1839977
1839894
-
Leu
GAG
[ENA]
¡û
>W1610725963
LMFG01000003
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
63627
63710
+
Leu
GAG
[ENA]
¡û
>W1610731086
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3396921
3396838
-
Leu
GAG
[ENA]
¡û
>W1610738024
LMOO01000010
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
3010
2927
-
Leu
GAG
[ENA]
¡û
>W1610740066
LMQI01000005
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
939823
939740
-
Leu
GAG
[ENA]
¡û
>W1610741204
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1225586
1225669
+
Leu
GAG
[ENA]
¡û
>W1610741205
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1227244
1227327
+
Leu
GAG
[ENA]
¡û
>W1610946105
LUYL01000009
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
38912
38829
-
Leu
GAG
[ENA]
¡û
>W1610949106
LVCF01000035
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
245839
245756
-
Leu
GAG
[ENA]
¡û
>W1710207911
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
1027676
1027591
-
Leu
GAG
[ENA]
¡û
>W1710556207
FOKA01000012
Actinomycetota
Cellulomonas marina [FOKA]
74406
74321
-
Leu
GAG
[ENA]
¡û
>W1710566730
FOSE01000002
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
472756
472839
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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