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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102277 (71 seq.)
>WENV180246231
OBDN01052687
[OBDN] human gut metagenome; human gut
102
186
+
Tyr
GTA
[ENA]
¢þ
>WENV180278340
OBHX01003569
[OBHX] metagenome; feces
779
695
-
Tyr
GTA
[ENA]
¢þ
>WENV180349730
OBLO01104090
[OBLO] metagenome; feces
529
445
-
Tyr
GTA
[ENA]
¢þ
>WENV180535314
OCHN01000179
[OCHN] human gut metagenome; human gut
17440
17524
+
Tyr
GTA
[ENA]
¢þ
>WENV180560974
OCKX01000120
[OCKX] human gut metagenome; human gut
6162
6246
+
Tyr
GTA
[ENA]
¢þ
>WENV180567901
OCLM01011066
[OCLM] human gut metagenome; human gut
769
685
-
Tyr
GTA
[ENA]
¢þ
>WENV180644369
OCSG01000444
[OCSG] human gut metagenome; human gut
34880
34796
-
Tyr
GTA
[ENA]
¢þ
>WENV180647443
OCSH01115365
[OCSH] human gut metagenome; human gut
338
254
-
Tyr
GTA
[ENA]
¢þ
>WENV180762223
ODHZ01078268
[ODHZ] human metagenome; G_DNA_Stool
83
-1
-
Tyr
GTA
[ENA]
¢þ
>WENV180876959
ODLT01064058
[ODLT] human metagenome; G_DNA_Stool
180
264
+
Tyr
GTA
[ENA]
¢þ
>WENV180993048
ODVQ01000435
[ODVQ] human metagenome; G_DNA_Stool
7824
7740
-
Tyr
GTA
[ENA]
¢þ
>WENV181422330
OGCO01001010
[OGCO] human gut metagenome; human gut
25617
25533
-
Tyr
GTA
[ENA]
¢þ
>WENV181661058
OGOG01001023
[OGOG] human gut metagenome; faeces
686
602
-
Tyr
GTA
[ENA]
¢þ
>WENV181716988
OGPS01072522
[OGPS] human gut metagenome; faeces
344
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181721418
OGPV01001850
[OGPV] human gut metagenome; faeces
13044
12960
-
Tyr
GTA
[ENA]
¢þ
>WENV181730255
OGQC01000487
[OGQC] human gut metagenome; faeces
13787
13703
-
Tyr
GTA
[ENA]
¢þ
>WENV181733919
OGQE01028031
[OGQE] human gut metagenome; faeces
796
712
-
Tyr
GTA
[ENA]
¢þ
>WENV181744039
OGQM01000022
[OGQM] human gut metagenome; faeces
59250
59334
+
Tyr
GTA
[ENA]
¢þ
>WENV181768265
OGRA01001084
[OGRA] human gut metagenome; faeces
26072
25988
-
Tyr
GTA
[ENA]
¢þ
>WENV181774534
OGRE01035767
[OGRE] human gut metagenome; faeces
276
192
-
Tyr
GTA
[ENA]
¢þ
>WENV181828267
OGUN01000051
[OGUN] human gut metagenome; faeces
66359
66275
-
Tyr
GTA
[ENA]
¢þ
>WENV181830289
OGUO01001500
[OGUO] human gut metagenome; faeces
8121
8037
-
Tyr
GTA
[ENA]
¢þ
>WENV181868688
OGWX01001358
[OGWX] human gut metagenome; faeces
11536
11620
+
Tyr
GTA
[ENA]
¢þ
>WENV181881720
OGXH01003190
[OGXH] human gut metagenome; faeces
5895
5979
+
Tyr
GTA
[ENA]
¢þ
>WENV181922699
OGYK01009395
[OGYK] human gut metagenome; faeces
1905
1821
-
Tyr
GTA
[ENA]
¢þ
>WENV182023416
OHCE01004281
[OHCE] human gut metagenome; feces
362
278
-
Tyr
GTA
[ENA]
¢þ
>WENV182143906
OHKV01052733
[OHKV] human gut metagenome; feces
313
229
-
Tyr
GTA
[ENA]
¢þ
>WENV182225387
OHRD01001150
[OHRD] human gut metagenome; feces
8213
8129
-
Tyr
GTA
[ENA]
¢þ
>WENV182282969
OHVJ01000357
[OHVJ] human gut metagenome; feces
7698
7614
-
Tyr
GTA
[ENA]
¢þ
>WENV182285196
OHVN01000148
[OHVN] human gut metagenome; feces
685
601
-
Tyr
GTA
[ENA]
¢þ
>WENV182290986
OHVZ01000004
[OHVZ] human gut metagenome; feces
124956
125040
+
Tyr
GTA
[ENA]
¢þ
>WENV182296121
OHWG01000656
[OHWG] human gut metagenome; feces
14722
14638
-
Tyr
GTA
[ENA]
¢þ
>WENV182306381
OHXC01025255
[OHXC] human gut metagenome; feces
641
725
+
Tyr
GTA
[ENA]
¢þ
>WENV182319806
OHYH01000924
[OHYH] human gut metagenome; feces
81
-1
-
Tyr
GTA
[ENA]
¢þ
>WENV182328310
OHZC01001009
[OHZC] human gut metagenome; feces
6400
6484
+
Tyr
GTA
[ENA]
¢þ
>WENV182360608
OICB01008343
[OICB] human gut metagenome; feces
1917
2001
+
Tyr
GTA
[ENA]
¢þ
>WENV182361393
OICD01000009
[OICD] human gut metagenome; feces
120362
120446
+
Tyr
GTA
[ENA]
¢þ
>WENV182364022
OICH01000045
[OICH] human gut metagenome; feces
47687
47771
+
Tyr
GTA
[ENA]
¢þ
>WENV182370563
OICT01001080
[OICT] human gut metagenome; feces
10792
10708
-
Tyr
GTA
[ENA]
¢þ
>WENV182376067
OIDD01002569
[OIDD] human gut metagenome; feces
1901
1817
-
Tyr
GTA
[ENA]
¢þ
>WENV182389471
OIED01000434
[OIED] human gut metagenome; feces
10808
10892
+
Tyr
GTA
[ENA]
¢þ
>WENV182511982
OIWL01001142
[OIWL] human gut metagenome; faeces
3350
3266
-
Tyr
GTA
[ENA]
¢þ
>WENV182519185
OIWP01005653
[OIWP] human gut metagenome; faeces
2941
2857
-
Tyr
GTA
[ENA]
¢þ
>WENV182538175
OIXH01047860
[OIXH] human gut metagenome; faeces
213
297
+
Tyr
GTA
[ENA]
¢þ
>WENV182651613
OJMH01002979
[OJMH] human gut metagenome; feces
8488
8572
+
Tyr
GTA
[ENA]
¢þ
>WENV182677796
OJNS01000077
[OJNS] human gut metagenome; human gut
33432
33348
-
Tyr
GTA
[ENA]
¢þ
>WENV182702136
OJOQ01002892
[OJOQ] human gut metagenome; stool sample
2025
2109
+
Tyr
GTA
[ENA]
¢þ
>WENV182732583
OJQB01005728
[OJQB] human gut metagenome; stool sample
608
524
-
Tyr
GTA
[ENA]
¢þ
>WENV182741813
OJQN01002451
[OJQN] human gut metagenome; stool sample
1924
1840
-
Tyr
GTA
[ENA]
¢þ
>WENV182757381
OJRH01002696
[OJRH] human gut metagenome; stool sample
3423
3339
-
Tyr
GTA
[ENA]
¢þ
>WENV182926604
OKUM01000507
[OKUM] human gut metagenome; feces
13225
13141
-
Tyr
GTA
[ENA]
¢þ
>WENV182929063
OKUQ01000024
[OKUQ] human gut metagenome; feces
88089
88173
+
Tyr
GTA
[ENA]
¢þ
>WENV183025178
OLFT01005250
[OLFT] human gut metagenome; faeces
3726
3810
+
Tyr
GTA
[ENA]
¢þ
>WENV183036192
OLGA01000279
[OLGA] human gut metagenome; faeces
39755
39839
+
Tyr
GTA
[ENA]
¢þ
>WENV183040595
OLGD01000056
[OLGD] human gut metagenome; faeces
67574
67490
-
Tyr
GTA
[ENA]
¢þ
>WENV183048918
OLGH01001206
[OLGH] human gut metagenome; faeces
20658
20742
+
Tyr
GTA
[ENA]
¢þ
>WENV183076997
OLIW01015495
[OLIW] human gut metagenome; feces
1546
1462
-
Tyr
GTA
[ENA]
¢þ
>WENV183145299
OLOM01000001
[OLOM] human gut metagenome; faeces
162914
162998
+
Tyr
GTA
[ENA]
¢þ
>WENV183150495
OLOP01001543
[OLOP] human gut metagenome; faeces
1944
1860
-
Tyr
GTA
[ENA]
¢þ
>WENV183183597
OLPL01000873
[OLPL] human gut metagenome; faeces
10559
10475
-
Tyr
GTA
[ENA]
¢þ
>WENV183184253
OLPN01000011
[OLPN] human gut metagenome; faeces
80341
80257
-
Tyr
GTA
[ENA]
¢þ
>WENV183195571
OLPT01012336
[OLPT] human gut metagenome; faeces
1754
1838
+
Tyr
GTA
[ENA]
¢þ
>WENV183202933
OLPY01000051
[OLPY] human gut metagenome; faeces
68376
68292
-
Tyr
GTA
[ENA]
¢þ
>WENV183226174
OLQO01001018
[OLQO] human gut metagenome; faeces
12351
12435
+
Tyr
GTA
[ENA]
¢þ
>WENV183280313
OLSB01003371
[OLSB] human gut metagenome; faeces
1434
1350
-
Tyr
GTA
[ENA]
¢þ
>WENV183300929
OLSO01004106
[OLSO] human gut metagenome; faeces
6416
6500
+
Tyr
GTA
[ENA]
¢þ
>WENV183308024
OLTV01000037
[OLTV] human gut metagenome; faeces
5307
5391
+
Tyr
GTA
[ENA]
¢þ
>WENV183529940
ONZZ01020840
[ONZZ] human gut metagenome; human gut
851
935
+
Tyr
GTA
[ENA]
¢þ
>WENV170028852
CDYF01019928
[CDYF] gut metagenome; human stools
95
11
-
Tyr
GTA
[ENA]
¢þ
>WENV170030481
CDYI01015396
[CDYI] gut metagenome; human stools
140916
141000
+
Tyr
GTA
[ENA]
¢þ
>WENV170092629
CEAG01053120
[CEAG] gut metagenome; human stools
542
458
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK