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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102636 (49 seq.)
>W1711361060
MDKE01000011
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
370526
370611
+
Leu
CAG
[ENA]
¡û
>W1711361069
MDKE01000018
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
54806
54721
-
Leu
CAG
[ENA]
¡û
>W131180082
ARMW01000020
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
26539
26624
+
Leu
CAG
[ENA]
¡û
>W141221468
AZYZ01000018
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
16448
16363
-
Leu
CAG
[ENA]
¡û
>W141283271
JALA01000013
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
16715
16630
-
Leu
CAG
[ENA]
¡û
>WENV170014388
AYRF01016733
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
176
261
+
Leu
CAG
[ENA]
¢þ
>WENV170015833
AZIJ01000677
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
716
801
+
Leu
CAG
[ENA]
¢þ
>WENV170015834
AZIJ01000677
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
853
938
+
Leu
CAG
[ENA]
¢þ
>WENV170015835
AZIJ01000677
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1010
1095
+
Leu
CAG
[ENA]
¢þ
>C181012442
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3452736
3452821
+
Leu
CAG
-
¡û
>C181012443
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3452877
3452962
+
Leu
CAG
-
¡û
>C181012444
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3453037
3453122
+
Leu
CAG
-
¡û
>C181012449
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
3971593
3971508
-
Leu
CAG
-
¡û
>W1910784535
MPZM01000009
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
27263
27348
+
Leu
CAG
[ENA]
¡û
>W1910784536
MPZM01000009
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
27420
27505
+
Leu
CAG
[ENA]
¡û
>W1910784537
MPZM01000009
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
27580
27665
+
Leu
CAG
[ENA]
¡û
>W1910784555
MPZM01000016
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
46615
46700
+
Leu
CAG
[ENA]
¡û
>W1910852624
NBIM01000003
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
137669
137584
-
Leu
CAG
[ENA]
¡û
>W1910852629
NBIM01000005
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
83793
83878
+
Leu
CAG
[ENA]
¡û
>W1910852630
NBIM01000005
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
83926
84011
+
Leu
CAG
[ENA]
¡û
>W1910852631
NBIM01000005
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
84083
84168
+
Leu
CAG
[ENA]
¡û
>W1911075378
NMUO01000012
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
23204
23289
+
Leu
CAG
[ENA]
¡û
>W1911075407
NMUO01000054
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
12455
12370
-
Leu
CAG
[ENA]
¡û
>W1911075408
NMUO01000054
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
12314
12229
-
Leu
CAG
[ENA]
¡û
>W1911075409
NMUO01000054
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
12154
12069
-
Leu
CAG
[ENA]
¡û
>W1911174158
NQJF01000006
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
110734
110649
-
Leu
CAG
[ENA]
¡û
>W1911174159
NQJF01000006
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
110603
110518
-
Leu
CAG
[ENA]
¡û
>W1911174160
NQJF01000006
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
110445
110360
-
Leu
CAG
[ENA]
¡û
>W1911174164
NQJF01000007
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
99352
99437
+
Leu
CAG
[ENA]
¡û
>W1810376737
PXIC01000016
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
16660
16575
-
Leu
CAG
[ENA]
¡û
>W1810390118
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
703980
704065
+
Leu
CAG
[ENA]
¡û
>W1810390120
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
704291
704376
+
Leu
CAG
[ENA]
¡û
>W1810390143
PXYG01000004
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
115615
115700
+
Leu
CAG
[ENA]
¡û
>W1810390231
PXYH01000017
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
24659
24574
-
Leu
CAG
[ENA]
¡û
>W1810390232
PXYH01000017
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
24518
24433
-
Leu
CAG
[ENA]
¡û
>W1810390233
PXYH01000017
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
24359
24274
-
Leu
CAG
[ENA]
¡û
>W1810390240
PXYH01000022
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
18878
18963
+
Leu
CAG
[ENA]
¡û
>W1810471826
QAGM01000003
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
69182
69267
+
Leu
CAG
[ENA]
¡û
>W1810471827
QAGM01000003
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
69315
69400
+
Leu
CAG
[ENA]
¡û
>W1810471828
QAGM01000003
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
69472
69557
+
Leu
CAG
[ENA]
¡û
>W1810471849
QAGM01000005
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
104814
104729
-
Leu
CAG
[ENA]
¡û
>W1810533083
QCZE01000002
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
106050
106135
+
Leu
CAG
[ENA]
¡û
>W1810533089
QCZE01000003
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
187607
187692
+
Leu
CAG
[ENA]
¡û
>W1810533090
QCZE01000003
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
187764
187849
+
Leu
CAG
[ENA]
¡û
>W1810533091
QCZE01000003
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
187922
188007
+
Leu
CAG
[ENA]
¡û
>C121007307
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
596298
596383
+
Leu
CAG
[Ensembl]
¡û
>C121007385
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
978739
978654
-
Leu
CAG
[Ensembl]
¡û
>C121007386
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
978602
978517
-
Leu
CAG
[Ensembl]
¡û
>C121007387
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
978445
978360
-
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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