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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102746 (48 seq.)
>W1710861728
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
79983
79901
-
Tyr
GTA
[ENA]
¡û
>W1710874083
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
109533
109449
-
Tyr
GTA
[ENA]
¡û
>W1710874880
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
592274
592358
+
Tyr
GTA
[ENA]
¡û
>W1710877425
LMQC01000001
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
582247
582165
-
Tyr
GTA
[ENA]
¡û
>W131054686
ANAY01000011
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
159035
159117
+
Tyr
GTA
[ENA]
¡û
>W131055115
ANBF01000179
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
16296
16378
+
Tyr
GTA
[ENA]
¡û
>W1712084119
NHQT01000002
Actinomycetota
Nocardioides sp. XL1 [NHQT]
253665
253747
+
Tyr
GTA
[ENA]
¡û
>C171033893
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
591731
591649
-
Tyr
GTA
-
¡û
>C171045501
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
612409
612327
-
Tyr
GTA
-
¡û
>C171045548
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
627774
627692
-
Tyr
GTA
-
¡û
>W131053501
ANAC01000022
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
94257
94173
-
Tyr
GTA
[ENA]
¡û
>W131054812
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
317148
317230
+
Tyr
GTA
[ENA]
¡û
>W131054924
ANBC01000294
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
729
813
+
Tyr
GTA
[ENA]
¡û
>W131053575
ANAE01000083
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
33764
33682
-
Tyr
GTA
[ENA]
¡û
>WENV181846245
OGVX01030333
[OGVX] freshwater metagenome; freshwater
70
152
+
Tyr
GTA
[ENA]
¢þ
>WENV181855615
OGWM01000086
[OGWM] freshwater metagenome; freshwater
10443
10525
+
Tyr
GTA
[ENA]
¢þ
>W141236329
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
174867
174783
-
Tyr
GTA
[ENA]
¡û
>WENV170228838
CEQG01046476
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1486
1404
-
Tyr
GTA
[ENA]
¢þ
>WENV170572096
FLOH01000528
[FLOH] marine metagenome; water
36112
36028
-
Tyr
GTA
[ENA]
¢þ
>W09103271
AAJB01000037
Actinomycetota
Nocardioides sp. JS614 [AAJB]
37366
37448
+
Tyr
GTA
[ENA]
¡û
>C181067281
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
592039
591957
-
Tyr
GTA
-
¡û
>C191159923
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
3117463
3117380
-
Tyr
GTA
-
¡û
>WENV002154
AACY020059530
Marine microbial communities from Global Ocean Sampling (GOS)
455
369
-
Tyr
GTA
[ENA]
>WENV022479
AACY020652688
Marine microbial communities from Global Ocean Sampling (GOS)
419
335
-
Tyr
GTA
[ENA]
>W141757997
JNYI01000088
Actinomycetota
Goodfellowiella coeruleoviolacea [JNYI]
3101
3183
+
Tyr
GTA
[ENA]
¡û
>W1910141243
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
680615
680533
-
Tyr
GTA
[ENA]
¡û
>W1910646715
LWUA01000035
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
6639
6557
-
Tyr
GTA
[ENA]
¡û
>W1911495740
OBQI01000002
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
694493
694411
-
Tyr
GTA
[ENA]
¡û
>W1911823552
QZVR01000004
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
90698
90780
+
Tyr
GTA
[ENA]
¡û
>W1810222199
POQU01000033
Actinomycetota
Blastococcus atacamensis P6 [POQU]
24264
24182
-
Tyr
GTA
[ENA]
¡û
>W1810539902
QDGZ01000005
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
439524
439606
+
Tyr
GTA
[ENA]
¡û
>W1810608313
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
272682
272764
+
Tyr
GTA
[ENA]
¡û
>W1810609370
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
1886742
1886824
+
Tyr
GTA
[ENA]
¡û
>W1810733533
QOHI01000003
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
142057
142139
+
Tyr
GTA
[ENA]
¡û
>SRA1015821
SRR023846.211984
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
188
270
+
Tyr
GTA
[SRA]
>WENV058781
AACY023341233
Marine microbial communities from Global Ocean Sampling (GOS)
587
503
-
Tyr
GTA
[ENA]
>WENV061612
AACY023435506
Marine microbial communities from Global Ocean Sampling (GOS)
1010
926
-
Tyr
GTA
[ENA]
>WENV061710
AACY023438154
Marine microbial communities from Global Ocean Sampling (GOS)
1393
1309
-
Tyr
GTA
[ENA]
>C131006718
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2771849
2771933
+
Tyr
GTA
[Ensembl]
¡û
>W1610597571
LFFA01000022
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
1737
1653
-
Tyr
GTA
[ENA]
¡û
>W1610724074
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
79983
79901
-
Tyr
GTA
[ENA]
¡û
>W1610736429
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
109533
109449
-
Tyr
GTA
[ENA]
¡û
>W1610737226
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
592274
592358
+
Tyr
GTA
[ENA]
¡û
>W1610739771
LMQC01000001
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
582247
582165
-
Tyr
GTA
[ENA]
¡û
>W1710514314
FNAW01000001
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
610028
609946
-
Tyr
GTA
[ENA]
¡û
>W1710515389
FNBT01000008
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
167095
167013
-
Tyr
GTA
[ENA]
¡û
>W1710588528
FQZK01000020
Actinomycetota
Nocardiopsis flavescens [FQZK]
7207
7291
+
Tyr
GTA
[ENA]
¡û
>W1710718818
LFFA01000022
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
1737
1653
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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