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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102996 (19 seq.)
>C018361
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
2397660
2397745
+
Leu
TAA
[Ensembl]
¡û
>WENV180376701
OBOM01058626
[OBOM] marine metagenome; Seawater
184
269
+
Leu
TAA
[ENA]
¢þ
>W08005923
ABIG01000014
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
20034
19952
-
Leu
TAA
[ENA]
¡û
>WENV170023733
BCQL01002045
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
568
483
-
Leu
TAA
[ENA]
¢þ
>W141426699
JEMU01000011
Alphaproteobacteria
Sulfitobacter mediterraneus [JEMU]
113266
113181
-
Leu
TAA
[ENA]
¡û
>C181152279
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
420782
420867
+
Leu
TAA
-
¡û
>C191083107
CP031946
Alphaproteobacteria
Ruegeria sp. AD91A [CP031946]
1818748
1818663
-
Leu
TAA
-
¡û
>C191160502
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
2173827
2173912
+
Leu
TAA
-
¡û
>W1910285329
FREZ01000017
Alphaproteobacteria
Ruegeria sp. Alg231-54 [FREZ]
54786
54701
-
Leu
TAA
[ENA]
¡û
>W1911539044
OMPH01000031
Alphaproteobacteria
Ruegeria sp. AU67 [OMPH]
12260
12175
-
Leu
TAA
[ENA]
¡û
>W1810578012
QEOS01000004
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
271577
271492
-
Leu
TAA
[ENA]
¡û
>W1810725013
QOCF01000001
Alphaproteobacteria
Ruegeria sp. A3M17 [QOCF]
12765
12680
-
Leu
TAA
[ENA]
¡û
>C11118683
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2093702
2093617
-
Leu
TAA
[Ensembl]
¡û
>C161083457
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
1240100
1240185
+
Leu
TAA
-
¡û
>W1610092529
CYPS01000017
Alphaproteobacteria
Ruegeria atlantica [CYPS]
12483
12398
-
Leu
TAA
[ENA]
¡û
>W1610092584
CYPU01000045
Alphaproteobacteria
Ruegeria atlantica [CYPU]
807
722
-
Leu
TAA
[ENA]
¡û
>W1710095784
CYPS01000017
Alphaproteobacteria
Ruegeria atlantica [CYPS]
12483
12398
-
Leu
TAA
[ENA]
¡û
>W1710095839
CYPU01000045
Alphaproteobacteria
Ruegeria atlantica [CYPU]
807
722
-
Leu
TAA
[ENA]
¡û
>W1710561993
FOOO01000002
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
24554
24639
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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