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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103042 (23 seq.)
>W1710900520
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
114607
114691
+
Leu
TAG
[ENA]
¡û
>W1710919584
LNXT01000019
Gammaproteobacteria
Legionella birminghamensis [LNXT]
64723
64807
+
Leu
TAG
[ENA]
¡û
>W1710920145
LNYH01000038
Gammaproteobacteria
Legionella israelensis [LNYH]
34143
34059
-
Leu
TAG
[ENA]
¡û
>W1710920370
LNYM01000019
Gammaproteobacteria
Legionella micdadei [LNYM]
119052
119136
+
Leu
TAG
[ENA]
¡û
>W1710920624
LNYT01000007
Gammaproteobacteria
Legionella rubrilucens [LNYT]
264313
264397
+
Leu
TAG
[ENA]
¡û
>C171110810
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
664377
664461
+
Leu
TAG
-
¡û
>WENV180297342
OBJA01023616
[OBJA] soil metagenome; sediment, water from around vicinity
1636
1552
-
Leu
TAG
[ENA]
¢þ
>W141273891
CCVW01000002
Gammaproteobacteria
Legionella massiliensis [CCVW]
516239
516155
-
Leu
TAG
[ENA]
¡û
>WENV170347409
CETG01131766
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1363
1447
+
Leu
TAG
[ENA]
¢þ
>WENV170634574
FYBJ01002187
[FYBJ] marine metagenome; marine
3234
3318
+
Leu
TAG
[ENA]
¢þ
>C181004547
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
1658978
1659062
+
Leu
TAG
-
¡û
>C181033857
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
2466812
2466895
+
Leu
TAG
-
¡û
>W141561027
JHYC01000013
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
52076
52160
+
Leu
TAG
[ENA]
¡û
>W1911662139
QFGE01000001
Gammaproteobacteria
Legionella taurinensis WH04 [QFGE]
368225
368141
-
Leu
TAG
[ENA]
¡û
>W1911662221
QFGG01000001
Gammaproteobacteria
Legionella taurinensis WH02 [QFGG]
376075
375991
-
Leu
TAG
[ENA]
¡û
>C161041430
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3252352
3252269
-
Leu
TAG
[Ensembl]
¡û
>C131010943
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
2863746
2863662
-
Leu
TAG
[Ensembl]
¡û
>W1610760507
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
114607
114691
+
Leu
TAG
[ENA]
¡û
>W1610777482
LNXT01000019
Gammaproteobacteria
Legionella birminghamensis [LNXT]
64723
64807
+
Leu
TAG
[ENA]
¡û
>W1610778043
LNYH01000038
Gammaproteobacteria
Legionella israelensis [LNYH]
34143
34059
-
Leu
TAG
[ENA]
¡û
>W1610778268
LNYM01000019
Gammaproteobacteria
Legionella micdadei [LNYM]
119052
119136
+
Leu
TAG
[ENA]
¡û
>W1610778522
LNYT01000007
Gammaproteobacteria
Legionella rubrilucens [LNYT]
264313
264397
+
Leu
TAG
[ENA]
¡û
>W1710539363
FNVH01000001
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
282172
282256
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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