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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103325 (34 seq.)
>W1710785723
LJIC01000090
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
28313
28397
+
Leu
CAG
[ENA]
¡û
>W1711783508
MVOD01000012
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
259567
259651
+
Leu
CAG
[ENA]
¡û
>C018975
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
52242
52326
+
Leu
CAG
[Ensembl]
¡û
>WENV181223512
OFDC01025535
[OFDC] hot springs metagenome; Water
651
735
+
Leu
CAG
[ENA]
¢þ
>W141194160
AYSU01000025
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
12930
13014
+
Leu
CAG
[ENA]
¡û
>W141220788
AZYE01001940
Alphaproteobacteria
Microvirga lupini [AZYE]
16403
16319
-
Leu
CAG
[ENA]
¡û
>W141220789
AZYE01001943
Alphaproteobacteria
Microvirga lupini [AZYE]
310
226
-
Leu
CAG
[ENA]
¡û
>W141223337
BADD01000781
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
4694
4778
+
Leu
CAG
[ENA]
¡û
>C08001581
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
1515738
1515822
+
Leu
CAG
[Ensembl]
¡û
>WENV170706820
LNAP01007203
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6917
7001
+
Leu
CAG
[ENA]
¢þ
>W141733733
JNLC01000010
Alphaproteobacteria
Bosea sp. 117 [JNLC]
129707
129791
+
Leu
CAG
[ENA]
¡û
>W141815699
JQJH01000003
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
299931
300015
+
Leu
CAG
[ENA]
¡û
>C09107886
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
148446
148530
+
Leu
CAG
[Ensembl]
¡û
>W1911219151
NRSI01000008
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
96979
97063
+
Leu
CAG
[ENA]
¡û
>W1911760574
QWVU01000034
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
1141
1225
+
Leu
CAG
[ENA]
¡û
>W1911787971
QYBB01000004
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
136089
136173
+
Leu
CAG
[ENA]
¡û
>W1911787999
QYBB01000023
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
24907
24823
-
Leu
CAG
[ENA]
¡û
>W1911788043
QYBC01000019
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
107855
107939
+
Leu
CAG
[ENA]
¡û
>W1911809166
QYYC01000031
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
75485
75569
+
Leu
CAG
[ENA]
¡û
>W1911809213
QYYD01000006
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
137468
137384
-
Leu
CAG
[ENA]
¡û
>W1810068781
PDZR01000002
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
153164
153080
-
Leu
CAG
[ENA]
¡û
>W1810672318
QJTI01000014
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
4280
4196
-
Leu
CAG
[ENA]
¡û
>W1810679439
QKQS01000023
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
518330
518414
+
Leu
CAG
[ENA]
¡û
>W1810787501
QRDT01000003
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
47030
46946
-
Leu
CAG
[ENA]
¡û
>W1810884365
QUMO01000002
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
129397
129313
-
Leu
CAG
[ENA]
¡û
>W1810884398
QUMP01000003
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
47030
46946
-
Leu
CAG
[ENA]
¡û
>W10110043
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
943830
943914
+
Leu
CAG
[ENA]
¡û
>W10112805
ADFI01000002
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
208228
208144
-
Leu
CAG
[ENA]
¡û
>C10110736
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
51747
51831
+
Leu
CAG
[Ensembl]
¡û
>C10112223
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
304690
304606
-
Leu
CAG
[Ensembl]
¡û
>W11112480
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
943830
943914
+
Leu
CAG
[ENA]
¡û
>W11116032
ADFI01000002
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
208228
208144
-
Leu
CAG
[ENA]
¡û
>C11118734
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
52463
52547
+
Leu
CAG
[Ensembl]
¡û
>W1610649529
LJIC01000090
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
28313
28397
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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