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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103504 (31 seq.)
>W1711097986
LTJE01000032
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
204845
204927
+
Leu
TAG
[ENA]
¡û
>W131177752
ARLA01000028
Bacteroidota
Psychroflexus tropicus DSM 15496 [ARLA]
645989
646071
+
Leu
TAG
[ENA]
¡û
>w015972
AAPR01000003
Bacteroidota
Psychroflexus torquis ATCC 700755 [AAPR]
278973
279059
+
Leu
TAG
[ENA]
¡û
>w013999
AAOC01000001
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
329651
329565
-
Leu
TAG
[ENA]
¡û
>WENV180285876
OBID01782313
[OBID] metagenome; sludge
77
159
+
Leu
TAG
[ENA]
¢þ
>WENV181393106
OFRX01049343
[OFRX] seawater metagenome; seawater
183
265
+
Leu
TAG
[ENA]
¢þ
>W141266236
CCMH01000006
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
147019
146935
-
Leu
TAG
[ENA]
¡û
>W141276079
JADN01000004
Bacteroidota
Tenacibaculum sp. 47A_GOM-205m [JADN]
132055
131971
-
Leu
TAG
[ENA]
¡û
>WENV183621032
OOFT01002846
[OOFT] marine metagenome; sea ice
480
562
+
Leu
TAG
[ENA]
¢þ
>WENV183629482
OOGP01050586
[OOGP] marine metagenome; seawater
183
265
+
Leu
TAG
[ENA]
¢þ
>WENV183704057
PDWI01000014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
205763
205681
-
Leu
TAG
[ENA]
¢þ
>WENV183708961
PDWI01021868
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
247
329
+
Leu
TAG
[ENA]
¢þ
>WENV183711457
PDWI01070138
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
824
906
+
Leu
TAG
[ENA]
¢þ
>WENV183712406
PDWI01099080
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
824
906
+
Leu
TAG
[ENA]
¢þ
>WENV183713700
PDWI01149691
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1
83
+
Leu
TAG
[ENA]
¢þ
>C191210742
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1912512
1912430
-
Leu
TAG
-
¡û
>W1911501356
OENC01000056
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
582789
582871
+
Leu
TAG
[ENA]
¡û
>W1911504336
OESZ01000001
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
526340
526258
-
Leu
TAG
[ENA]
¡û
>W1810063464
PDUU01000008
Bacteroidota
Tenacibaculum discolor 4G03 [PDUU]
203676
203594
-
Leu
TAG
[ENA]
¡û
>W1810596578
QGGQ01000005
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
180449
180531
+
Leu
TAG
[ENA]
¡û
>W1810684815
QKYV01000005
Bacteroidota
Mesonia algae DSM 15361 [QKYV]
171677
171595
-
Leu
TAG
[ENA]
¡û
>C10106860
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
1032150
1032066
-
Leu
TAG
[Ensembl]
¡û
>C11111972
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
1542837
1542921
+
Leu
TAG
[Ensembl]
¡û
>W1511388595
JSWF01000044
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
160067
159985
-
Leu
TAG
[ENA]
¡û
>W1511391179
JSYQ01000024
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
40843
40927
+
Leu
TAG
[ENA]
¡û
>C11123790
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1195884
1195966
+
Leu
TAG
[Ensembl]
¡û
>W11170351
AFPK01000034
Bacteroidota
Ochrovirga pacifica S85 [AFPK]
37515
37599
+
Leu
TAG
[ENA]
¡û
>C161059110
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
2634688
2634770
+
Leu
TAG
[Ensembl]
¡û
>W1710516835
FNCW01000002
Bacteroidota
Psychroflexus sediminis [FNCW]
153809
153891
+
Leu
TAG
[ENA]
¡û
>W1710534996
FNSF01000005
Bacteroidota
Tenacibaculum sp. MAR_2009_124 [FNSF]
480606
480522
-
Leu
TAG
[ENA]
¡û
>W1710587019
FQXQ01000006
Bacteroidota
Wenyingzhuangia marina [FQXQ]
107480
107396
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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