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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104390 (12 seq.)
>C025512
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1122824
1122905
+
Leu
TAG
[Ensembl]
¡û
>WENV180013244
FMSI01059232
[FMSI] soil metagenome; Soil
5160
5243
+
Leu
TAG
[ENA]
¢þ
>WENV181411146
OGCI01014356
[OGCI] hot springs metagenome; Hot spring water
1893
1975
+
Leu
TAG
[ENA]
¢þ
>WENV181414401
OGCL01000334
[OGCL] hot springs metagenome; Hot spring water
38147
38065
-
Leu
TAG
[ENA]
¢þ
>W08011557
ABVJ01000046
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
1685
1604
-
Leu
TAG
[ENA]
¡û
>C181030474
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2224166
2224249
+
Leu
TAG
-
¡û
>C191001226
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
661357
661275
-
Leu
TAG
-
¡û
>C191085242
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
174015
173931
-
Leu
TAG
-
¡û
>C141007955
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
357553
357471
-
Leu
TAG
-
¡û
>C09103586
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
4848645
4848564
-
Leu
TAG
[Ensembl]
¡û
>W1511108016
JJML01000037
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
26739
26656
-
Leu
TAG
[ENA]
¡û
>C131004308
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
2328217
2328298
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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