This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104569 (18 seq.)
>W1711312063
MASI01000001
Alphaproteobacteria
Methyloligella halotolerans [MASI]
337049
336965
-
Leu
TAG
[ENA]
¡û
>W1711386723
MEFR01000202
Alphaproteobacteria
Acetobacteraceae bacterium SCN 69-10 [MEFR]
2748
2664
-
Leu
TAG
[ENA]
¡û
>WENV180297880
OBJA01104278
[OBJA] soil metagenome; sediment, water from around vicinity
200
284
+
Leu
TAG
[ENA]
¢þ
>WENV181298022
OFHL01016014
[OFHL] soil metagenome; Clay
981
1065
+
Leu
TAG
[ENA]
¢þ
>WENV183624899
OOGE01030596
[OOGE] marine metagenome; sea ice
515
599
+
Leu
TAG
[ENA]
¢þ
>WENV183627634
OOGL01020852
[OOGL] marine metagenome; sea ice
510
426
-
Leu
TAG
[ENA]
¢þ
>WENV183681002
ORMF010249897
[ORMF] groundwater metagenome; groundwater
1607
1691
+
Leu
TAG
[ENA]
¢þ
>WENV170199253
CEPL01092301
[CEPL] marine metagenome genome assembly TARA_045_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
769
685
-
Leu
TAG
[ENA]
¢þ
>WENV170648344
JRHI01000188
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
10291
10375
+
Leu
TAG
[ENA]
¢þ
>WENV170652253
JRYH01000325
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
114362
114278
-
Leu
TAG
[ENA]
¢þ
>WENV170655103
JTFN01005119
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2213
2297
+
Leu
TAG
[ENA]
¢þ
>C181170902
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
23803
23719
-
Leu
TAG
-
¡û
>C191158447
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
169224
169140
-
Leu
TAG
-
¡û
>C151002859
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
2141668
2141752
+
Leu
TAG
[Ensembl]
¡û
>C151104295
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
3043084
3043000
-
Leu
TAG
[Ensembl]
¡û
>C151104334
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
2730745
2730829
+
Leu
TAG
[Ensembl]
¡û
>ENV09003785
ADGO01174755
Compost metagenome contig00001
202
286
+
Leu
TAG
[ENA]
¡û
>W1710524928
FNJC01000003
Alphaproteobacteria
Filomicrobium insigne [FNJC]
418291
418375
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK