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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104906 (29 seq.)
>C171036898
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
173141
173225
+
Tyr
GTA
-
¡û
>WENV180103174
OAPA01004708
[OAPA] marine metagenome; ENVO:00002010
377
295
-
Tyr
GTA
[ENA]
¢þ
>WENV180110565
OAPN01000798
[OAPN] marine metagenome; 2011
1101
1183
+
Tyr
GTA
[ENA]
¢þ
>WENV180114576
OAPS01020763
[OAPS] marine metagenome; sea water
372
454
+
Tyr
GTA
[ENA]
¢þ
>WENV180115009
OAPS01093976
[OAPS] marine metagenome; sea water
309
391
+
Tyr
GTA
[ENA]
¢þ
>WENV180209179
OBAK01029626
[OBAK] marine metagenome; ENVO.00002150
118
35
-
Tyr
GTA
[ENA]
¢þ
>WENV180359573
OBNS01002469
[OBNS] marine metagenome; Seawater
578
660
+
Tyr
GTA
[ENA]
¢þ
>WENV180361096
OBNU01116681
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
147
229
+
Tyr
GTA
[ENA]
¢þ
>WENV180361869
OBNW01005714
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
147
230
+
Tyr
GTA
[ENA]
¢þ
>WENV180362084
OBNW01034189
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
264
346
+
Tyr
GTA
[ENA]
¢þ
>WENV180368147
OBOF01030203
[OBOF] marine metagenome; ENVO:00002010
597
514
-
Tyr
GTA
[ENA]
¢þ
>WENV180370276
OBOH01058293
[OBOH] marine metagenome; ENVO:00002010
116
34
-
Tyr
GTA
[ENA]
¢þ
>WENV180391134
OBPM01017222
[OBPM] marine metagenome; ENVO:00002010
354
272
-
Tyr
GTA
[ENA]
¢þ
>WENV180394605
OBPS01024227
[OBPS] marine metagenome; ENVO:00002010 seawater
169
87
-
Tyr
GTA
[ENA]
¢þ
>WENV180395221
OBPT01004273
[OBPT] marine metagenome; ENVO:00002010 seawater
2285
2203
-
Tyr
GTA
[ENA]
¢þ
>WENV180591378
OCOV01016310
[OCOV] marine metagenome; ENVO:01000301
211
295
+
Tyr
GTA
[ENA]
¢þ
>WENV181369989
OFQR01004767
[OFQR] freshwater metagenome; Freshwater Lake
748
830
+
Tyr
GTA
[ENA]
¢þ
>WENV181856097
OGWM01018656
[OGWM] freshwater metagenome; freshwater
319
237
-
Tyr
GTA
[ENA]
¢þ
>WENV170601245
FUWD010163442
[FUWD] metagenome; unknown
188
270
+
Tyr
GTA
[ENA]
¢þ
>WENV170601993
FUWD010207419
[FUWD] metagenome; unknown
348
432
+
Tyr
GTA
[ENA]
¢þ
>WENV170621720
FUWD013070645
[FUWD] metagenome; unknown
617
533
-
Tyr
GTA
[ENA]
¢þ
>WENV170629907
FUWD013286336
[FUWD] metagenome; unknown
617
533
-
Tyr
GTA
[ENA]
¢þ
>C191178335
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1227632
1227550
-
Tyr
GTA
-
¡û
>C191178374
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1206253
1206171
-
Tyr
GTA
-
¡û
>C191178412
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
1180266
1180184
-
Tyr
GTA
-
¡û
>C151025268
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
212019
212103
+
Tyr
GTA
[Ensembl]
¡û
>WENV030494
AACY021287157
Marine microbial communities from Global Ocean Sampling (GOS)
54
140
+
Tyr
GTA
[ENA]
>WENV058478
AACY023330405
Marine microbial communities from Global Ocean Sampling (GOS)
1254
1340
+
Tyr
GTA
[ENA]
>WENV058620
AACY023335828
Marine microbial communities from Global Ocean Sampling (GOS)
935
1021
+
Tyr
GTA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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