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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105010 (20 seq.)
>W1710853028
LLWF02000214
Alphaproteobacteria
Roseomonas mucosa [LLWF]
352
270
-
Tyr
GTA
[ENA]
¡û
>C171039558
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3040967
3040885
-
Tyr
GTA
-
¡û
>C171074534
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
435031
435116
+
Tyr
GTA
-
¡û
>C171074586
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
439871
439956
+
Tyr
GTA
-
¡û
>C171074638
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
443150
443235
+
Tyr
GTA
-
¡û
>C171074690
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
441073
441158
+
Tyr
GTA
-
¡û
>C171074742
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
439872
439957
+
Tyr
GTA
-
¡û
>C171074794
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
435033
435118
+
Tyr
GTA
-
¡û
>C009816
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
435032
435117
+
Tyr
GTA
[Ensembl]
¡û
>W141276648
JADY01000014
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
105973
106055
+
Tyr
GTA
[ENA]
¡û
>WENV170650057
JRYD01007829
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
179
94
-
Tyr
GTA
[ENA]
¢þ
>C181102032
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3955401
3955483
+
Tyr
GTA
-
¡û
>W141558693
JHWD01000001
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
527241
527323
+
Tyr
GTA
[ENA]
¡û
>W1810692351
QLIX01000032
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
42028
42112
+
Tyr
GTA
[ENA]
¡û
>C151004006
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
437151
437236
+
Tyr
GTA
[Ensembl]
¡û
>C151004058
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
440538
440623
+
Tyr
GTA
[Ensembl]
¡û
>C151004110
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
435052
435137
+
Tyr
GTA
[Ensembl]
¡û
>W121113859
ALOX01000104
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
297
215
-
Tyr
GTA
[ENA]
¡û
>W1610716141
LLWF01000260
Alphaproteobacteria
Roseomonas mucosa [LLWF]
462
544
+
Tyr
GTA
[ENA]
¡û
>W1710084300
BDLP01000674
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
483
401
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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