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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105043 (84 seq.)
>W1710865575
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
866881
866965
+
Leu
TAG
[ENA]
¡û
>W1710866766
LMHS01000004
Actinomycetota
Microbacterium sp. Root180 [LMHS]
66019
65937
-
Leu
TAG
[ENA]
¡û
>W1710868866
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
787266
787182
-
Leu
TAG
[ENA]
¡û
>W1710874104
LMNI01000010
Actinomycetota
Microbacterium sp. Leaf288 [LMNI]
885573
885655
+
Leu
TAG
[ENA]
¡û
>W1710876585
LMPI01000033
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
100962
100878
-
Leu
TAG
[ENA]
¡û
>W1710876641
LMPK01000011
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
38735
38819
+
Leu
TAG
[ENA]
¡û
>W1711173342
LWCU01000016
Actinomycetota
Microbacterium sp. H83 [LWCU]
58409
58325
-
Leu
TAG
[ENA]
¡û
>W1711724728
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
793495
793577
+
Leu
TAG
[ENA]
¡û
>WENV001410
AACY020040328
Marine microbial communities from Global Ocean Sampling (GOS)
601
685
+
Leu
TAG
[ENA]
>WENV180098131
MTBK01230231
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2505
2588
+
Leu
TAG
[ENA]
¢þ
>WENV180114359
OAPS01006269
[OAPS] marine metagenome; sea water
85
167
+
Leu
TAG
[ENA]
¢þ
>WENV180394341
OBPS01001619
[OBPS] marine metagenome; ENVO:00002010 seawater
1880
1798
-
Leu
TAG
[ENA]
¢þ
>WENV180395170
OBPT01002920
[OBPT] marine metagenome; ENVO:00002010 seawater
3540
3458
-
Leu
TAG
[ENA]
¢þ
>W141243140
CAJF01000007
Actinomycetota
Microbacterium yannicii PS01 [CAJF]
67147
67065
-
Leu
TAG
[ENA]
¡û
>W141256101
CBVQ010000218
Actinomycetota
Microbacterium sp. C448 [CBVQ]
54606
54524
-
Leu
TAG
[ENA]
¡û
>WENV183727193
PJTO01011607
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
804
722
-
Leu
TAG
[ENA]
¢þ
>WENV183728516
PJTQ01000101
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
11484
11402
-
Leu
TAG
[ENA]
¢þ
>WENV183737165
PJUD01000794
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2000
2082
+
Leu
TAG
[ENA]
¢þ
>WENV183740586
PJUF01003849
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1263
1345
+
Leu
TAG
[ENA]
¢þ
>WENV170551910
CXWJ01029334
[CXWJ] wastewater metagenome; activated sludge
494
576
+
Leu
TAG
[ENA]
¢þ
>WENV170621067
FUWD013047986
[FUWD] metagenome; unknown
2244
2162
-
Leu
TAG
[ENA]
¢þ
>WENV170629234
FUWD013264748
[FUWD] metagenome; unknown
2244
2162
-
Leu
TAG
[ENA]
¢þ
>WENV170659831
JXWR01161365
[JXWR] soil metagenome; rice field; ambient CO2
182
264
+
Leu
TAG
[ENA]
¢þ
>WENV170843461
MDSZ01260959
[MDSZ] marine metagenome; seawater
1689
1773
+
Leu
TAG
[ENA]
¢þ
>C181143737
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
1477895
1477977
+
Leu
TAG
-
¡û
>C181143931
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1992643
1992725
+
Leu
TAG
-
¡û
>C191073214
CP031015
Actinomycetota
Microbacterium sp. ABRD28 [CP031015]
2365247
2365329
+
Leu
TAG
-
¡û
>C191074883
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
1877918
1878000
+
Leu
TAG
-
¡û
>C191119719
CP034121
Actinomycetota
Microbacterium sp. RG1 [CP034121]
1262131
1262213
+
Leu
TAG
-
¡û
>C191122397
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1531832
1531750
-
Leu
TAG
-
¡û
>C191158802
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2334377
2334459
+
Leu
TAG
-
¡û
>C191185970
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
2372623
2372706
+
Leu
TAG
-
¡û
>W141750779
JNSD01000012
Actinomycetota
actinobacterium acMicro-4 [JNSD]
42869
42953
+
Leu
TAG
[ENA]
¡û
>W1910832060
MYFP01000021
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
27023
27105
+
Leu
TAG
[ENA]
¡û
>W1911075293
NMUM01000023
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
91486
91404
-
Leu
TAG
[ENA]
¡û
>W1911566363
PCOT01000018
Actinomycetota
Microbacterium sp. MYb72 [PCOT]
19680
19762
+
Leu
TAG
[ENA]
¡û
>W1911566516
PCOW01000020
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
23056
22974
-
Leu
TAG
[ENA]
¡û
>W1810058086
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2617839
2617921
+
Leu
TAG
[ENA]
¡û
>W1810248602
PQBR01000013
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
47605
47687
+
Leu
TAG
[ENA]
¡û
>W1810368335
PVZO01000003
Actinomycetota
Arthrobacter woluwensis NM-35 [PVZO]
134814
134730
-
Leu
TAG
[ENA]
¡û
>W1810538508
QDFV01000006
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
58359
58441
+
Leu
TAG
[ENA]
¡û
>W1810569024
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
690753
690835
+
Leu
TAG
[ENA]
¡û
>W1810586226
QFFE01000008
Actinomycetota
Microbacterium sp. KCTC 39802 [QFFE]
193841
193923
+
Leu
TAG
[ENA]
¡û
>W1810861632
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
80022
79940
-
Leu
TAG
[ENA]
¡û
>SRA1025155
SRR035084.501080
454 Sequencing (SRP001805)
131
213
+
Leu
TAG
[SRA]
>C151093242
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
1399986
1400070
+
Leu
TAG
-
¡û
>SRA1052898
SRR035098.296140
454 Sequencing (SRP001819)
269
187
-
Leu
TAG
[SRA]
>C11115207
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3435679
3435595
-
Leu
TAG
[Ensembl]
¡û
>W1511528663
JYIT01000066
Actinomycetota
Microbacterium azadirachtae DSM 23848 [JYIT]
57630
57714
+
Leu
TAG
[ENA]
¡û
>W1511528900
JYIY01000079
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
222402
222486
+
Leu
TAG
[ENA]
¡û
>W1511528919
JYIZ01000029
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
21232
21150
-
Leu
TAG
[ENA]
¡û
>W1511529010
JYJB01000004
Actinomycetota
Microbacterium hydrocarbonoxydans SA35 [JYJB]
154684
154602
-
Leu
TAG
[ENA]
¡û
>W1610050288
BBFR01000913
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
19
103
+
Leu
TAG
[ENA]
¡û
>W1610067332
BCQN01000001
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
273145
273229
+
Leu
TAG
[ENA]
¡û
>W1610068054
BCRA01000021
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
34399
34483
+
Leu
TAG
[ENA]
¡û
>W1610590746
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
51485
51569
+
Leu
TAG
[ENA]
¡û
>W1610590785
LDRS01000012
Actinomycetota
Microbacterium testaceum [LDRS]
103066
102982
-
Leu
TAG
[ENA]
¡û
>W1610590858
LDRT01000139
Actinomycetota
Microbacterium testaceum [LDRT]
1968
1884
-
Leu
TAG
[ENA]
¡û
>W1610590893
LDRU01000042
Actinomycetota
Microbacterium testaceum [LDRU]
1268
1184
-
Leu
TAG
[ENA]
¡û
>W1610625671
LIAY01000038
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
8284
8368
+
Leu
TAG
[ENA]
¡û
>W1610727921
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
866881
866965
+
Leu
TAG
[ENA]
¡û
>W1610729112
LMHS01000004
Actinomycetota
Microbacterium sp. Root180 [LMHS]
66019
65937
-
Leu
TAG
[ENA]
¡û
>W1610731212
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
787266
787182
-
Leu
TAG
[ENA]
¡û
>W1610736450
LMNI01000010
Actinomycetota
Microbacterium sp. Leaf288 [LMNI]
885573
885655
+
Leu
TAG
[ENA]
¡û
>W1610738931
LMPI01000033
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
100962
100878
-
Leu
TAG
[ENA]
¡û
>W1610738987
LMPK01000011
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
38735
38819
+
Leu
TAG
[ENA]
¡û
>W1610981947
LWCU01000016
Actinomycetota
Microbacterium sp. H83 [LWCU]
58409
58325
-
Leu
TAG
[ENA]
¡û
>W1710046687
BBFR01000913
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
19
103
+
Leu
TAG
[ENA]
¡û
>W1710064705
BCQN01000001
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
273145
273229
+
Leu
TAG
[ENA]
¡û
>W1710065427
BCRA01000021
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
34399
34483
+
Leu
TAG
[ENA]
¡û
>W1710521770
FNGQ01000006
Actinomycetota
Microbacterium azadirachtae cl140 [FNGQ]
55672
55756
+
Leu
TAG
[ENA]
¡û
>W1710534588
FNRY01000002
Actinomycetota
Microbacterium humi [FNRY]
120387
120305
-
Leu
TAG
[ENA]
¡û
>W1710535428
FNSN01000003
Actinomycetota
Arthrobacter woluwensis [FNSN]
1624808
1624724
-
Leu
TAG
[ENA]
¡û
>W1710535602
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
1392677
1392593
-
Leu
TAG
[ENA]
¡û
>W1710538419
FNUN01000006
Actinomycetota
Microbacterium azadirachtae cl12a [FNUN]
55672
55756
+
Leu
TAG
[ENA]
¡û
>W1710538585
FNUQ01000006
Actinomycetota
Microbacterium azadirachtae cl152 [FNUQ]
265520
265436
-
Leu
TAG
[ENA]
¡û
>W1710570916
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
67583
67501
-
Leu
TAG
[ENA]
¡û
>W1710574974
FOYR01000003
Actinomycetota
Microbacterium azadirachtae cl127 [FOYR]
50600
50684
+
Leu
TAG
[ENA]
¡û
>W1710575703
FOZJ01000002
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
1057939
1058021
+
Leu
TAG
[ENA]
¡û
>W1710710026
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
51485
51569
+
Leu
TAG
[ENA]
¡û
>W1710710065
LDRS01000012
Actinomycetota
Microbacterium testaceum [LDRS]
103066
102982
-
Leu
TAG
[ENA]
¡û
>W1710710138
LDRT01000139
Actinomycetota
Microbacterium testaceum [LDRT]
1968
1884
-
Leu
TAG
[ENA]
¡û
>W1710710173
LDRU01000042
Actinomycetota
Microbacterium testaceum [LDRU]
1268
1184
-
Leu
TAG
[ENA]
¡û
>W1710756798
LIAY01000038
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
8284
8368
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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