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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105198 (31 seq.)
>C171074588
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
672347
672432
+
Leu
GAG
-
¡û
>C171074640
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
671174
671259
+
Leu
GAG
-
¡û
>C171074692
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
668967
669052
+
Leu
GAG
-
¡û
>C171074744
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
672348
672433
+
Leu
GAG
-
¡û
>C171074796
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
662577
662662
+
Leu
GAG
-
¡û
>C009818
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
662572
662657
+
Leu
GAG
[Ensembl]
¡û
>WENV180100561
OAOO01006243
[OAOO] marine metagenome; ENVO:00002010
251
167
-
Leu
GAG
[ENA]
¢þ
>W141082084
ATSX01000004
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
26984
27069
+
Leu
GAG
[ENA]
¡û
>W08009493
ABPH01000002
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
269607
269692
+
Leu
GAG
[ENA]
¡û
>W141200338
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
348604
348519
-
Leu
GAG
[ENA]
¡û
>W141224545
BAIN01000001
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
24978
25063
+
Leu
GAG
[ENA]
¡û
>W141226055
BAJT01000003
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
71469
71554
+
Leu
GAG
[ENA]
¡û
>W141226147
BAJV01000002
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
220972
221057
+
Leu
GAG
[ENA]
¡û
>W141247933
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
217595
217680
+
Leu
GAG
[ENA]
¡û
>C08005248
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1934233
1934318
+
Leu
GAG
[Ensembl]
¡û
>WENV170669649
LAHS01001063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
48215
48300
+
Leu
GAG
[ENA]
¢þ
>W1910181778
BJMI01000008
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
56216
56301
+
Leu
GAG
[ENA]
¡û
>W1910182351
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
340077
340162
+
Leu
GAG
[ENA]
¡û
>C09106283
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
136027
136112
+
Leu
GAG
[Ensembl]
¡û
>W1910913975
NHRY01000236
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
13240
13155
-
Leu
GAG
[ENA]
¡û
>W1911597837
PNQZ01000059
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
61146
61061
-
Leu
GAG
[ENA]
¡û
>W1810763156
QQAW01000009
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
56310
56395
+
Leu
GAG
[ENA]
¡û
>C151004008
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
665163
665248
+
Leu
GAG
[Ensembl]
¡û
>C151004060
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
669088
669173
+
Leu
GAG
[Ensembl]
¡û
>C151004112
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
662373
662458
+
Leu
GAG
[Ensembl]
¡û
>WENV11100095
ADWX01132822
Ant fungus garden metagenome, Atta colombica fungus garden
302
387
+
Leu
GAG
[ENA]
¡û
>W11179033
AGFR01000014
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
18872
18787
-
Leu
GAG
[ENA]
¡û
>C161001083
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1270080
1270165
+
Leu
GAG
[Ensembl]
¡û
>W1610041004
BANB01000178
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2520
2604
+
Leu
GAG
[ENA]
¡û
>W1710038202
BANB01000178
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2520
2604
+
Leu
GAG
[ENA]
¡û
>W1710624613
JOPB01000029
Alphaproteobacteria
Commensalibacter intestini [JOPB]
18978
18893
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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