This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105236 (18 seq.)
>W131224048
AUCN01000009
Betaproteobacteria
Chitinibacter tainanensis DSM 15459 [AUCN]
421974
422058
+
Leu
TAG
[ENA]
¡û
>W141200388
AYXT01000010
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
949636
949720
+
Leu
TAG
[ENA]
¡û
>WENV170690665
LFRM01355318
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2986
3070
+
Leu
TAG
[ENA]
¢þ
>WENV170690771
LFRM01360294
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
17285
17201
-
Leu
TAG
[ENA]
¢þ
>C181049079
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
919226
919310
+
Leu
TAG
-
¡û
>C181049944
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
904739
904823
+
Leu
TAG
-
¡û
>C181050018
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
905284
905368
+
Leu
TAG
-
¡û
>C191208067
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
907305
907389
+
Leu
TAG
-
¡û
>W141560345
JHXN01000001
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
129260
129344
+
Leu
TAG
[ENA]
¡û
>W1910891685
NEXS01000008
Betaproteobacteria
Advenella sp. S44 [NEXS]
42430
42346
-
Leu
TAG
[ENA]
¡û
>W1810701975
QMFX01000004
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
122976
122892
-
Leu
TAG
[ENA]
¡û
>C151004921
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
1933548
1933632
+
Leu
TAG
[Ensembl]
¡û
>W1511350718
JRMO01000014
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
134414
134498
+
Leu
TAG
[ENA]
¡û
>W1511403604
JTLG01000021
Betaproteobacteria
Chitinibacter sp. ZOR0017 [JTLG]
328758
328674
-
Leu
TAG
[ENA]
¡û
>C11122619
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1557467
1557551
+
Leu
TAG
[Ensembl]
¡û
>W11171204
AFQG01000043
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
7061
7145
+
Leu
TAG
[ENA]
¡û
>C121004863
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
828085
828001
-
Leu
TAG
[Ensembl]
¡û
>C121009930
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
937627
937711
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK