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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105430 (30 seq.)
>C171036181
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
1335322
1335238
-
Leu
TAG
-
¡û
>C171120277
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
2322167
2322251
+
Leu
TAG
-
¡û
>C171120335
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
2318572
2318656
+
Leu
TAG
-
¡û
>C171126433
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
2425605
2425689
+
Leu
TAG
-
¡û
>WENV170189055
CEPB01114881
[CEPB] marine metagenome genome assembly TARA_057_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8061
7977
-
Leu
TAG
[ENA]
¢þ
>W141428610
JEOA01000005
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
46410
46326
-
Leu
TAG
[ENA]
¡û
>WENV170844225
MDTA01002160
[MDTA] marine metagenome; seawater
27125
27209
+
Leu
TAG
[ENA]
¢þ
>C181063336
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
1907201
1907117
-
Leu
TAG
-
¡û
>C181088305
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
2555939
2556023
+
Leu
TAG
-
¡û
>C181193667
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
1771037
1770953
-
Leu
TAG
-
¡û
>W1910007921
BDER01000043
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
45367
45283
-
Leu
TAG
[ENA]
¡û
>W1910008028
BDET01000057
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
45462
45378
-
Leu
TAG
[ENA]
¡û
>W1910008187
BDEW01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
29737
29653
-
Leu
TAG
[ENA]
¡û
>W1910008340
BDEZ01000029
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
45052
44968
-
Leu
TAG
[ENA]
¡û
>C141012398
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
582431
582347
-
Leu
TAG
[Ensembl]
¡û
>W1910657450
MAPU01000009
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
55518
55602
+
Leu
TAG
[ENA]
¡û
>W1810069705
PEBQ01000108
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
45025
44941
-
Leu
TAG
[ENA]
¡û
>C10100684
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
1693575
1693491
-
Leu
TAG
[Ensembl]
¡û
>C10100738
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
1785829
1785745
-
Leu
TAG
[Ensembl]
¡û
>C10100795
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
1786840
1786756
-
Leu
TAG
[Ensembl]
¡û
>C10100852
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
1785823
1785739
-
Leu
TAG
[Ensembl]
¡û
>C10100909
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
1785823
1785739
-
Leu
TAG
[Ensembl]
¡û
>C10101023
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
1786840
1786756
-
Leu
TAG
[Ensembl]
¡û
>C10101080
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
1785823
1785739
-
Leu
TAG
[Ensembl]
¡û
>W1511271149
JOKL01000072
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
55490
55574
+
Leu
TAG
[ENA]
¡û
>W11149327
AEUP01000026
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
203371
203455
+
Leu
TAG
[ENA]
¡û
>C161001922
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
1885969
1885885
-
Leu
TAG
-
¡û
>W121123015
BACG01000015
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
7001
6917
-
Leu
TAG
[ENA]
¡û
>W121126878
CADO01000067
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
192269
192353
+
Leu
TAG
[ENA]
¡û
>W121126898
CADQ01000012
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
151827
151911
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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