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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106074 (16 seq.)
>W1710919738
LNXX01000007
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
154292
154208
-
Leu
GAG
[ENA]
¡û
>W1710920034
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
35843
35759
-
Leu
GAG
[ENA]
¡û
>W1710920702
LNYV01000013
Gammaproteobacteria
Legionella sainthelensi [LNYV]
230535
230619
+
Leu
GAG
[ENA]
¡û
>W1711124971
LUKY01000033
Gammaproteobacteria
Candidatus Rickettsiella isopodorum [LUKY]
105456
105372
-
Leu
GAG
[ENA]
¡û
>C171106585
CP020412
Gammaproteobacteria
Legionella longbeachae FDAARGOS_201 [CP020412]
2271046
2270962
-
Leu
GAG
-
¡û
>C171114425
CP020894
Gammaproteobacteria
Legionella longbeachae F1157CHC [CP020894]
2884744
2884828
+
Leu
GAG
-
¡û
>WENV170647591
JQIA01039130
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1125
1041
-
Leu
GAG
[ENA]
¢þ
>C191198933
LR134178
Gammaproteobacteria
Legionella sainthelensi NCTC12450 [LR134178]
270257
270341
+
Leu
GAG
-
¡û
>C191204071
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
311150
311234
+
Leu
GAG
-
¡û
>C191210082
LR134388
Gammaproteobacteria
Legionella sainthelensi NCTC11988 [LR134388]
269121
269205
+
Leu
GAG
-
¡û
>W10107327
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
1667877
1667793
-
Leu
GAG
[ENA]
¡û
>C10108631
FN650140
Gammaproteobacteria
Legionella longbeachae NSW150 [FN650140]
311338
311422
+
Leu
GAG
[Ensembl]
¡û
>W11109616
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
1667877
1667793
-
Leu
GAG
[ENA]
¡û
>W1610777636
LNXX01000007
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
154292
154208
-
Leu
GAG
[ENA]
¡û
>W1610777932
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
35843
35759
-
Leu
GAG
[ENA]
¡û
>W1610778600
LNYV01000013
Gammaproteobacteria
Legionella sainthelensi [LNYV]
230535
230619
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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