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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106365 (12 seq.)
>W131215958
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
460492
460577
+
Tyr
GTA
[ENA]
¡û
>W1712105560
NIRR01000001
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
94391
94308
-
Tyr
GTA
[ENA]
¡û
>WENV170997516
MWWG01168412
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
272
357
+
Tyr
GTA
[ENA]
¢þ
>C191154869
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
650458
650541
+
Tyr
GTA
-
¡û
>C191183797
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
2824849
2824932
+
Tyr
GTA
-
¡û
>W1911788131
QYCN01000001
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
141734
141651
-
Tyr
GTA
[ENA]
¡û
>W1810678950
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
864810
864893
+
Tyr
GTA
[ENA]
¡û
>C151009412
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2647351
2647436
+
Tyr
GTA
[Ensembl]
¡û
>C151017372
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4070685
4070602
-
Tyr
GTA
[Ensembl]
¡û
>C151063999
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3640924
3640841
-
Tyr
GTA
[Ensembl]
¡û
>C151096192
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
198503
198586
+
Tyr
GTA
-
¡û
>W1710605417
FWWW01000071
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
5024
5107
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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