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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10642 (94 seq.)
>W1710785387
LJHU01000131
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
29849
29758
-
Ser
GCT
[ENA]
¡û
>W1710863848
LMFL01000017
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
45371
45280
-
Ser
GCT
[ENA]
¡û
>W1710863849
LMFL01000017
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
45167
45076
-
Ser
GCT
[ENA]
¡û
>W1710873819
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
89090
89181
+
Ser
GCT
[ENA]
¡û
>W1710876088
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
717814
717905
+
Ser
GCT
[ENA]
¡û
>W1710877297
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
895201
895292
+
Ser
GCT
[ENA]
¡û
>W131221565
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
456751
456660
-
Ser
GCT
[ENA]
¡û
>W1711501719
MKRY01000039
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
29768
29859
+
Ser
GCT
[ENA]
¡û
>W1711718096
MTHE01000001
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
457955
457864
-
Ser
GCT
[ENA]
¡û
>W1712106169
NIVP01000001
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
162511
162602
+
Ser
GCT
[ENA]
¡û
>C171094872
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2234420
2234329
-
Ser
GCT
-
¡û
>W131052407
AMYY01000001
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
225513
225422
-
Ser
GCT
[ENA]
¡û
>W131218267
ATXN01000003
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
372877
372968
+
Ser
GCT
[ENA]
¡û
>WENV180014324
FPIC01169101
[FPIC] soil metagenome; Soil
179
270
+
Ser
GCT
[ENA]
¢þ
>WENV180111360
OAPN01068845
[OAPN] marine metagenome; 2011
112
203
+
Ser
GCT
[ENA]
¢þ
>WENV180364143
OBNZ01105683
[OBNZ] marine metagenome; ENVO:00002010
104
13
-
Ser
GCT
[ENA]
¢þ
>WENV180364585
OBOA01042051
[OBOA] marine metagenome; Deep Chlorophyll Maximum
309
218
-
Ser
GCT
[ENA]
¢þ
>W141042999
AMFA01000039
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
16446
16355
-
Ser
GCT
[ENA]
¡û
>WENV181171249
OEIV010178191
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
215
306
+
Ser
GCT
[ENA]
¢þ
>WENV181193170
OEPS011559910
[OEPS] soil metagenome; soil
82
173
+
Ser
GCT
[ENA]
¢þ
>WENV181223103
OFDC01001974
[OFDC] hot springs metagenome; Water
166
257
+
Ser
GCT
[ENA]
¢þ
>WENV181227177
OFDN01002838
[OFDN] hot springs metagenome; Water
114
23
-
Ser
GCT
[ENA]
¢þ
>WENV181370979
OFQU01003364
[OFQU] wastewater metagenome; Exp Tend CN 90WW
2424
2333
-
Ser
GCT
[ENA]
¢þ
>WENV181371456
OFQV01006076
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
1110
1019
-
Ser
GCT
[ENA]
¢þ
>WENV181379116
OFRC01024647
[OFRC] wastewater metagenome; Exp Tend CN 10WW
580
671
+
Ser
GCT
[ENA]
¢þ
>WENV181381861
OFRF01019548
[OFRF] wastewater metagenome; Exp Tend CN 50WW
530
621
+
Ser
GCT
[ENA]
¢þ
>WENV181384388
OFRI01000532
[OFRI] wastewater metagenome; Exp Tend VB 90WW
5528
5437
-
Ser
GCT
[ENA]
¢þ
>WENV181401252
OFSF01095483
[OFSF] wastewater metagenome; Exp Tend VB 100WW
394
485
+
Ser
GCT
[ENA]
¢þ
>WENV181402369
OFTY01000881
[OFTY] sludge metagenome; sludge
395
486
+
Ser
GCT
[ENA]
¢þ
>W08010820
ABRU01000031
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
12104
12195
+
Ser
GCT
[ENA]
¡û
>W141230481
BATC01000064
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
9434
9343
-
Ser
GCT
[ENA]
¡û
>WENV183727512
PJTP01000009
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
329544
329635
+
Ser
GCT
[ENA]
¢þ
>WENV183728326
PJTQ01000015
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
253746
253655
-
Ser
GCT
[ENA]
¢þ
>WENV183730905
PJTS01001982
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2775
2866
+
Ser
GCT
[ENA]
¢þ
>WENV183733487
PJTY01002731
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3405
3314
-
Ser
GCT
[ENA]
¢þ
>WENV183734545
PJTZ01016705
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
485
576
+
Ser
GCT
[ENA]
¢þ
>WENV183735463
PJUB01000010
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
214189
214280
+
Ser
GCT
[ENA]
¢þ
>WENV183738930
PJUE01000472
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
14118
14209
+
Ser
GCT
[ENA]
¢þ
>WENV183740255
PJUF01000852
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
11647
11738
+
Ser
GCT
[ENA]
¢þ
>WENV170011946
APMI01105935
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
236
327
+
Ser
GCT
[ENA]
¢þ
>WENV170192975
CEPG01040868
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
109
200
+
Ser
GCT
[ENA]
¢þ
>WENV170201098
CEPP01076398
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
918
827
-
Ser
GCT
[ENA]
¢þ
>WENV170574455
FLYM01040549
[FLYM] hot springs metagenome; Sediment
4912
5003
+
Ser
GCT
[ENA]
¢þ
>WENV170646000
JQGF01005674
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
945
1036
+
Ser
GCT
[ENA]
¢þ
>WENV170658955
JUGB01001611
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
607
516
-
Ser
GCT
[ENA]
¢þ
>WENV170680829
LFEF01025447
[LFEF] freshwater metagenome; waterbloom
83
174
+
Ser
GCT
[ENA]
¢þ
>WENV170784074
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
97622
97531
-
Ser
GCT
[ENA]
¢þ
>WENV170838383
MDSZ01166767
[MDSZ] marine metagenome; seawater
137367
137276
-
Ser
GCT
[ENA]
¢þ
>C181056267
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
158480
158389
-
Ser
GCT
-
¡û
>C191094008
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2932309
2932218
-
Ser
GCT
-
¡û
>C191134445
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2824243
2824152
-
Ser
GCT
-
¡û
>C191157407
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1241606
1241515
-
Ser
GCT
-
¡û
>C191159621
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
2242652
2242743
+
Ser
GCT
-
¡û
>C191166123
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2207670
2207579
-
Ser
GCT
-
¡û
>C191189138
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1961543
1961452
-
Ser
GCT
-
¡û
>C191220419
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1272888
1272979
+
Ser
GCT
-
¡û
>W141551930
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
516040
515949
-
Ser
GCT
[ENA]
¡û
>W141712451
JMQR01000073
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
12257
12166
-
Ser
GCT
[ENA]
¡û
>W141731233
JNIX01000010
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
38526
38617
+
Ser
GCT
[ENA]
¡û
>W1910182677
BJNC01000004
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
109122
109031
-
Ser
GCT
[ENA]
¡û
>W1910374312
FUIE01000010
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
17840
17931
+
Ser
GCT
[ENA]
¡û
>W1910725227
MGLJ01000356
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
96
5
-
Ser
GCT
[ENA]
¡û
>W1910725243
MGLK01000003
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
36294
36385
+
Ser
GCT
[ENA]
¡û
>W1911566729
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
503012
503103
+
Ser
GCT
[ENA]
¡û
>W1911566939
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
503012
503103
+
Ser
GCT
[ENA]
¡û
>W1911567187
PCPK01000001
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
95616
95525
-
Ser
GCT
[ENA]
¡û
>W1911567277
PCPM01000003
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
95629
95538
-
Ser
GCT
[ENA]
¡û
>W1911567389
PCPO01000006
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
13194
13103
-
Ser
GCT
[ENA]
¡û
>W1911737847
QTTA01000010
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
288581
288490
-
Ser
GCT
[ENA]
¡û
>W1911738147
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
369515
369606
+
Ser
GCT
[ENA]
¡û
>W1911760337
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
542659
542568
-
Ser
GCT
[ENA]
¡û
>W1810000939
BEWU01000001
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
106797
106888
+
Ser
GCT
[ENA]
¡û
>W1810693147
QLLC01000004
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
21180
21089
-
Ser
GCT
[ENA]
¡û
>W10109845
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
144864
144773
-
Ser
GCT
[ENA]
¡û
>C10102220
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2477462
2477371
-
Ser
GCT
[Ensembl]
¡û
>W11112282
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
144864
144773
-
Ser
GCT
[ENA]
¡û
>W11123440
ADUI01000127
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
13056
12965
-
Ser
GCT
[ENA]
¡û
>W1511489487
JWSY01000027
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
73868
73959
+
Ser
GCT
[ENA]
¡û
>W1511547896
JZRG01000023
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
29445
29536
+
Ser
GCT
[ENA]
¡û
>W1511596078
LBNT01000014
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
110259
110168
-
Ser
GCT
[ENA]
¡û
>C161047057
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2738818
2738727
-
Ser
GCT
[Ensembl]
¡û
>C161089095
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
903578
903669
+
Ser
GCT
[Ensembl]
¡û
>C161089810
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
756655
756746
+
Ser
GCT
[Ensembl]
¡û
>W1610074223
BCWM01000009
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
58902
58811
-
Ser
GCT
[ENA]
¡û
>W1610649193
LJHU01000131
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
29849
29758
-
Ser
GCT
[ENA]
¡û
>W1610726194
LMFL01000017
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
45371
45280
-
Ser
GCT
[ENA]
¡û
>W1610726195
LMFL01000017
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
45167
45076
-
Ser
GCT
[ENA]
¡û
>W1610736165
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
89090
89181
+
Ser
GCT
[ENA]
¡û
>W1610738434
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
717814
717905
+
Ser
GCT
[ENA]
¡û
>W1610739643
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
895201
895292
+
Ser
GCT
[ENA]
¡û
>W1710071341
BCWM01000009
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
58902
58811
-
Ser
GCT
[ENA]
¡û
>W1710084621
BDMM01000002
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
567736
567827
+
Ser
GCT
[ENA]
¡û
>W1710527013
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
319716
319807
+
Ser
GCT
[ENA]
¡û
>W1710576174
FOZV01000002
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
39732
39823
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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