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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106454 (7 seq.)
>C025509
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
376874
376955
+
Leu
CAA
[Ensembl]
¡û
>WENV180012887
FMSI01027829
[FMSI] soil metagenome; Soil
1856
1937
+
Leu
CAA
[ENA]
¢þ
>WENV181414128
OGCL01000035
[OGCL] hot springs metagenome; Hot spring water
34217
34298
+
Leu
CAA
[ENA]
¢þ
>C181030470
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1642251
1642332
+
Leu
CAA
-
¡û
>C191001199
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
438551
438632
+
Leu
CAA
-
¡û
>C191085209
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
216031
216112
+
Leu
CAA
-
¡û
>C141007928
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
755639
755720
+
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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