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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10666 (123 seq.)
>W1710876674
LMPL01000001
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
624878
624969
+
Ser
GCT
[ENA]
¡û
>W1710909535
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1711006815
LQOQ01000034
Actinomycetota
Mycolicibacterium confluentis [LQOQ]
97772
97863
+
Ser
GCT
[ENA]
¡û
>W1711049703
LRQY01000021
Actinomycetota
Prescottella equi [LRQY]
29708
29799
+
Ser
GCT
[ENA]
¡û
>W1711049794
LRRA01000002
Actinomycetota
Prescottella equi [LRRA]
33761
33852
+
Ser
GCT
[ENA]
¡û
>W1711179504
LWHR01000008
Actinomycetota
Prescottella equi [LWHR]
36596
36687
+
Ser
GCT
[ENA]
¡û
>W1711179556
LWHS01000011
Actinomycetota
Prescottella equi [LWHS]
35746
35837
+
Ser
GCT
[ENA]
¡û
>W1711179610
LWHT01000007
Actinomycetota
Prescottella equi [LWHT]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711179716
LWHV01000006
Actinomycetota
Prescottella equi [LWHV]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711179761
LWHW01000006
Actinomycetota
Prescottella equi [LWHW]
32987
33078
+
Ser
GCT
[ENA]
¡û
>W1711179818
LWHX01000009
Actinomycetota
Prescottella equi [LWHX]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711179872
LWHY01000007
Actinomycetota
Prescottella equi [LWHY]
82620
82711
+
Ser
GCT
[ENA]
¡û
>W1711179975
LWIA01000005
Actinomycetota
Prescottella equi [LWIA]
32987
33078
+
Ser
GCT
[ENA]
¡û
>W1711180082
LWIC01000010
Actinomycetota
Prescottella equi [LWIC]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711192341
LWTQ01000011
Actinomycetota
Prescottella equi [LWTQ]
33778
33869
+
Ser
GCT
[ENA]
¡û
>W1711192387
LWTR01000124
Actinomycetota
Prescottella equi [LWTR]
211
120
-
Ser
GCT
[ENA]
¡û
>W1711192436
LWTS01000009
Actinomycetota
Prescottella equi [LWTS]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711192493
LWTT01000013
Actinomycetota
Prescottella equi [LWTT]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711192518
LWTU01000004
Actinomycetota
Prescottella equi [LWTU]
31588
31679
+
Ser
GCT
[ENA]
¡û
>W1711192596
LWTV01000011
Actinomycetota
Prescottella equi [LWTV]
146668
146577
-
Ser
GCT
[ENA]
¡û
>W1711192645
LWTW01000011
Actinomycetota
Prescottella equi [LWTW]
12955
12864
-
Ser
GCT
[ENA]
¡û
>W1711192695
LWTX01000009
Actinomycetota
Prescottella equi [LWTX]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711192746
LWTY01000008
Actinomycetota
Prescottella equi [LWTY]
31585
31676
+
Ser
GCT
[ENA]
¡û
>W1711207267
LXFH01000011
Actinomycetota
Prescottella equi [LXFH]
62885
62976
+
Ser
GCT
[ENA]
¡û
>W1711207322
LXFI01000008
Actinomycetota
Prescottella equi [LXFI]
146706
146615
-
Ser
GCT
[ENA]
¡û
>W1711234530
LYCQ01000315
Actinomycetota
Nocardia farcinica [LYCQ]
51379
51288
-
Ser
GCT
[ENA]
¡û
>W1711281599
LZMI01000001
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
64195
64286
+
Ser
GCT
[ENA]
¡û
>W1711281924
LZMO01000270
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
23816
23907
+
Ser
GCT
[ENA]
¡û
>W1711281956
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101357
101266
-
Ser
GCT
[ENA]
¡û
>W1711286452
LZTC01000020
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
12599
12508
-
Ser
GCT
[ENA]
¡û
>W1711286519
LZTD01000093
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
46320
46229
-
Ser
GCT
[ENA]
¡û
>W1711286543
LZTE01000025
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
104986
105077
+
Ser
GCT
[ENA]
¡û
>W1711460540
MJEI01000053
Actinomycetota
Williamsia sp. 1135 [MJEI]
1374
1283
-
Ser
GCT
[ENA]
¡û
>W1711460602
MJEJ01000037
Actinomycetota
Williamsia sp. 1138 [MJEJ]
163518
163609
+
Ser
GCT
[ENA]
¡û
>W1711492284
MKKG01000033
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
45189
45280
+
Ser
GCT
[ENA]
¡û
>W1711776892
MVKV01000001
Actinomycetota
Gordonia sp. IITR100 [MVKV]
507366
507275
-
Ser
GCT
[ENA]
¡û
>W1711784487
MVPX01000040
Actinomycetota
Gordonia sp. i37 [MVPX]
7351
7442
+
Ser
GCT
[ENA]
¡û
>W1712061681
NGFO01000001
Actinomycetota
Gordonia lacunae [NGFO]
179060
179151
+
Ser
GCT
[ENA]
¡û
>W131109075
APHK01000045
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
3629
3720
+
Ser
GCT
[ENA]
¡û
>W131156561
AQPW01000016
Actinomycetota
Gordonia terrae C-6 [AQPW]
59342
59433
+
Ser
GCT
[ENA]
¡û
>W131185138
ARTM01000032
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
259360
259451
+
Ser
GCT
[ENA]
¡û
>W131186263
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
6121415
6121506
+
Ser
GCT
[ENA]
¡û
>W131239457
BANR01000026
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
73880
73971
+
Ser
GCT
[ENA]
¡û
>W131239509
BANS01000063
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
14668
14759
+
Ser
GCT
[ENA]
¡û
>W131239690
BANX01000009
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
20131
20040
-
Ser
GCT
[ENA]
¡û
>WENV180095936
MTBK01099241
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1794
1704
-
Ser
GCT
[ENA]
¢þ
>WENV180096602
MTBK01137969
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
8312
8222
-
Ser
GCT
[ENA]
¢þ
>WENV181170023
OEIV010020077
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
788
879
+
Ser
GCT
[ENA]
¢þ
>WENV181371500
OFQV01010165
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
944
1034
+
Ser
GCT
[ENA]
¢þ
>W141144178
AWTB01000033
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
51077
50986
-
Ser
GCT
[ENA]
¡û
>W141194581
AYTE01000004
Actinomycetota
Williamsia sp. D3 [AYTE]
52753
52662
-
Ser
GCT
[ENA]
¡û
>W141200035
AYXO01000009
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
173111
173202
+
Ser
GCT
[ENA]
¡û
>W141256047
CBVP010000185
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
4950
5041
+
Ser
GCT
[ENA]
¡û
>WENV170566306
FKKE01014784
[FKKE] freshwater metagenome; freshwater
8785
8694
-
Ser
GCT
[ENA]
¢þ
>C191020762
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
284132
284223
+
Ser
GCT
-
¡û
>C191050831
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
716988
716897
-
Ser
GCT
-
¡û
>C191117148
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
3620010
3619920
-
Ser
GCT
-
¡û
>W09109086
ABTV01000012
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
92289
92378
+
Ser
GCT
[ENA]
¡û
>C191166005
CP039432
Actinomycetota
Rhodococcus sp. SGAir0479 [CP039432]
4320698
4320789
+
Ser
GCT
-
¡û
>W141758755
JNYV01000002
Actinomycetota
Kitasatospora arboriphila [JNYV]
841010
841101
+
Ser
GCT
[ENA]
¡û
>W141760709
JOAF01000003
Actinomycetota
Microbispora sp. NRRL B-24597 [JOAF]
841145
841236
+
Ser
GCT
[ENA]
¡û
>W1920000203
FVPM01000130
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
9424
9333
-
Ser
GCT
[ENA]
¡û
>W1910370918
FUEZ01000004
Actinomycetota
Mycobacterium numidiamassiliense AB215 [FUEZ]
318782
318871
+
Ser
GCT
[ENA]
¡û
>W1910370965
FUFA01000004
Actinomycetota
Mycobacterium rhizamassiliense AB57 [FUFA]
89828
89917
+
Ser
GCT
[ENA]
¡û
>W1911141577
NOZR01000017
Actinomycetota
Mycolicibacterium sphagni ATCC 33027 [NOZR]
89030
89120
+
Ser
GCT
[ENA]
¡û
>W1911180197
NQOE01000001
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
3494367
3494277
-
Ser
GCT
[ENA]
¡û
>W1810006147
BFCH01000048
Actinomycetota
Mycobacterium montefiorense BS [BFCH]
57674
57583
-
Ser
GCT
[ENA]
¡û
>W1810057143
PDHO01000003
Actinomycetota
Mycobacterium sp. ENV421 [PDHO]
388353
388443
+
Ser
GCT
[ENA]
¡û
>W1810069217
PEBD01000008
Actinomycetota
Williamsia marianensis BULT 1.1 [PEBD]
766965
767056
+
Ser
GCT
[ENA]
¡û
>W1810487035
QAYH01000001
Actinomycetota
Mycobacterium sp. YR782 [QAYH]
748374
748284
-
Ser
GCT
[ENA]
¡û
>W1810577796
QEOM01000010
Actinomycetota
Williamsia marianensis DSM 44944 [QEOM]
197830
197921
+
Ser
GCT
[ENA]
¡û
>W1810658300
QJJF01000007
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
160121
160212
+
Ser
GCT
[ENA]
¡û
>W1810671210
QJSP01000023
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
35138
35229
+
Ser
GCT
[ENA]
¡û
>W1810762992
QQAT01000024
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
12939
13030
+
Ser
GCT
[ENA]
¡û
>W10116526
ADNW01000003
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
92233
92142
-
Ser
GCT
[ENA]
¡û
>C10107049
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
335164
335253
+
Ser
GCT
[Ensembl]
¡û
>W11121210
ADNW02000011
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
25267
25176
-
Ser
GCT
[ENA]
¡û
>W1511518879
JXYP01000005
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
104438
104529
+
Ser
GCT
[ENA]
¡û
>W1511640310
LDTZ01000020
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
37654
37563
-
Ser
GCT
[ENA]
¡û
>W11181057
AGIQ01000002
Actinomycetota
Mycolicibacterium rhodesiae JS60 [AGIQ]
76797
76706
-
Ser
GCT
[ENA]
¡û
>W11184678
BACI01000056
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
17181
17090
-
Ser
GCT
[ENA]
¡û
>C121006216
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
5386448
5386357
-
Ser
GCT
[Ensembl]
¡û
>W1610050710
BBGD01000326
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
2294
2203
-
Ser
GCT
[ENA]
¡û
>W1610051026
BBGK01000155
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
671
580
-
Ser
GCT
[ENA]
¡û
>W1610051122
BBGN01000895
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
655
564
-
Ser
GCT
[ENA]
¡û
>W1610062162
BCNF01000116
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
12362
12271
-
Ser
GCT
[ENA]
¡û
>W1610068608
BCRL01000038
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
25839
25748
-
Ser
GCT
[ENA]
¡û
>W1610069920
BCSW01000038
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
1944
1853
-
Ser
GCT
[ENA]
¡û
>W1610078012
BDAP01000001
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
245100
245191
+
Ser
GCT
[ENA]
¡û
>W1610082633
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
51859
51950
+
Ser
GCT
[ENA]
¡û
>W121123913
BAEI01000075
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
120952
120861
-
Ser
GCT
[ENA]
¡û
>W121124265
BAFB01000001
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
8716
8625
-
Ser
GCT
[ENA]
¡û
>W121124343
BAFC01000116
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
70560
70469
-
Ser
GCT
[ENA]
¡û
>W121126541
BAHB01000066
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
19562
19471
-
Ser
GCT
[ENA]
¡û
>W121126594
BAHC01000151
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
21200
21109
-
Ser
GCT
[ENA]
¡û
>W121126692
BAHE01000020
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
126283
126374
+
Ser
GCT
[ENA]
¡û
>W121123636
BAED01000020
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
237111
237202
+
Ser
GCT
[ENA]
¡û
>W121123868
BAEH01000106
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
91615
91524
-
Ser
GCT
[ENA]
¡û
>C131001558
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
342971
343062
+
Ser
GCT
[Ensembl]
¡û
>W1610515303
FMAX01000005
Actinomycetota
Gordonia sp. v-85 [FMAX]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1610638769
LIYC01000019
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
71803
71712
-
Ser
GCT
[ENA]
¡û
>W1610739020
LMPL01000001
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
624878
624969
+
Ser
GCT
[ENA]
¡û
>W1610767894
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1610890832
LRQY01000021
Actinomycetota
Prescottella equi [LRQY]
29708
29799
+
Ser
GCT
[ENA]
¡û
>W1610890923
LRRA01000002
Actinomycetota
Prescottella equi [LRRA]
33761
33852
+
Ser
GCT
[ENA]
¡û
>W1611040884
LZMI01000001
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
64195
64286
+
Ser
GCT
[ENA]
¡û
>W1611041209
LZMO01000270
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
23816
23907
+
Ser
GCT
[ENA]
¡û
>W1611041241
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101357
101266
-
Ser
GCT
[ENA]
¡û
>W1611044013
LZTC01000020
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
12599
12508
-
Ser
GCT
[ENA]
¡û
>W1611044080
LZTD01000093
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
46320
46229
-
Ser
GCT
[ENA]
¡û
>W1611044104
LZTE01000025
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
104986
105077
+
Ser
GCT
[ENA]
¡û
>W1710047109
BBGD01000326
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
2294
2203
-
Ser
GCT
[ENA]
¡û
>W1710047425
BBGK01000155
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
671
580
-
Ser
GCT
[ENA]
¡û
>W1710047521
BBGN01000895
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
655
564
-
Ser
GCT
[ENA]
¡û
>W1710059703
BCNF01000116
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
12362
12271
-
Ser
GCT
[ENA]
¡û
>W1710065981
BCRL01000038
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
25839
25748
-
Ser
GCT
[ENA]
¡û
>W1710076571
BDAP01000001
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
245100
245191
+
Ser
GCT
[ENA]
¡û
>W1710081807
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
51859
51950
+
Ser
GCT
[ENA]
¡û
>W1710083023
BDIV01000007
Actinomycetota
Rhodococcus sp. Br-6 [BDIV]
51876
51967
+
Ser
GCT
[ENA]
¡û
>W1710500993
FMAX01000005
Actinomycetota
Gordonia sp. v-85 [FMAX]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1710527899
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
3672574
3672483
-
Ser
GCT
[ENA]
¡û
>W1710598119
FTNT01000005
Actinomycetota
Williamsia sterculiae [FTNT]
34554
34643
+
Ser
GCT
[ENA]
¡û
>W1710774600
LIYC01000019
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
71803
71712
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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