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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106823 (89 seq.)
>W1711123954
LUJO01000018
Bacteroidota
Candidatus Homeothermus arabinoxylanisolvens M4 [LUJO]
52137
52219
+
Leu
TAG
[ENA]
¡û
>WENV180811229
ODJN01000028
[ODJN] human metagenome; G_DNA_Stool
105010
105093
+
Leu
TAG
[ENA]
¡û
>WENV181235595
OFEY01001120
[OFEY] mouse gut metagenome; faeces
10562
10644
+
Leu
TAG
[ENA]
¡û
>WENV181236353
OFEZ01000412
[OFEZ] mouse gut metagenome; faeces
313
397
+
Leu
TAG
[ENA]
¡û
>WENV181237354
OFFB01000127
[OFFB] mouse gut metagenome; faeces
30921
30839
-
Leu
TAG
[ENA]
¡û
>WENV181238374
OFFC01000191
[OFFC] mouse gut metagenome; faeces
3595
3513
-
Leu
TAG
[ENA]
¡û
>WENV181239411
OFFD01000731
[OFFD] mouse gut metagenome; faeces
10611
10693
+
Leu
TAG
[ENA]
¡û
>WENV181240419
OFFE01001252
[OFFE] mouse gut metagenome; faeces
10684
10766
+
Leu
TAG
[ENA]
¡û
>WENV181242251
OFFG01000018
[OFFG] mouse gut metagenome; faeces
148086
148004
-
Leu
TAG
[ENA]
¡û
>WENV181243523
OFFH01000137
[OFFH] mouse gut metagenome; faeces
53255
53173
-
Leu
TAG
[ENA]
¡û
>WENV181244564
OFFI01000248
[OFFI] mouse gut metagenome; faeces
12031
11949
-
Leu
TAG
[ENA]
¡û
>WENV181245521
OFFJ01000327
[OFFJ] mouse gut metagenome; faeces
27373
27291
-
Leu
TAG
[ENA]
¡û
>WENV181248019
OFFL01000546
[OFFL] mouse gut metagenome; faeces
35672
35754
+
Leu
TAG
[ENA]
¡û
>WENV181249171
OFFM01001102
[OFFM] mouse gut metagenome; faeces
5696
5614
-
Leu
TAG
[ENA]
¡û
>WENV181249319
OFFM01002892
[OFFM] mouse gut metagenome; faeces
51
135
+
Leu
TAG
[ENA]
¡û
>WENV181250192
OFFN01001192
[OFFN] mouse gut metagenome; faeces
3595
3513
-
Leu
TAG
[ENA]
¡û
>WENV181251024
OFFO01000727
[OFFO] mouse gut metagenome; faeces
13983
13901
-
Leu
TAG
[ENA]
¡û
>WENV181251479
OFFO01012795
[OFFO] mouse gut metagenome; faeces
1285
1203
-
Leu
TAG
[ENA]
¡û
>WENV181253140
OFFQ01001289
[OFFQ] mouse gut metagenome; faeces
10759
10841
+
Leu
TAG
[ENA]
¡û
>WENV181254222
OFFR01001575
[OFFR] mouse gut metagenome; faeces
9260
9178
-
Leu
TAG
[ENA]
¡û
>WENV181255369
OFFS01002013
[OFFS] mouse gut metagenome; faeces
5747
5829
+
Leu
TAG
[ENA]
¡û
>WENV181256201
OFFT01000846
[OFFT] mouse gut metagenome; faeces
9886
9804
-
Leu
TAG
[ENA]
¡û
>WENV181257341
OFFU01000658
[OFFU] mouse gut metagenome; faeces
22514
22432
-
Leu
TAG
[ENA]
¡û
>WENV181258650
OFFV01001375
[OFFV] mouse gut metagenome; faeces
3595
3513
-
Leu
TAG
[ENA]
¡û
>WENV181260457
OFFX01000039
[OFFX] mouse gut metagenome; faeces
10759
10841
+
Leu
TAG
[ENA]
¡û
>WENV181261848
OFFY01000484
[OFFY] mouse gut metagenome; faeces
40490
40572
+
Leu
TAG
[ENA]
¡û
>WENV181263464
OFFZ01003199
[OFFZ] mouse gut metagenome; faeces
3978
4060
+
Leu
TAG
[ENA]
¡û
>WENV181265185
OFGA01037992
[OFGA] mouse gut metagenome; faeces
1178
1260
+
Leu
TAG
[ENA]
¡û
>WENV181267212
OFGC01001528
[OFGC] mouse gut metagenome; faeces
13232
13314
+
Leu
TAG
[ENA]
¡û
>WENV181267223
OFGC01001603
[OFGC] mouse gut metagenome; faeces
3595
3513
-
Leu
TAG
[ENA]
¡û
>WENV181267810
OFGD01000045
[OFGD] mouse gut metagenome; faeces
61748
61830
+
Leu
TAG
[ENA]
¡û
>WENV181270919
OFGF01002332
[OFGF] mouse gut metagenome; faeces
1543
1625
+
Leu
TAG
[ENA]
¡û
>WENV181273409
OFGH01001625
[OFGH] mouse gut metagenome; faeces
3595
3513
-
Leu
TAG
[ENA]
¡û
>WENV181274307
OFGI01000095
[OFGI] mouse gut metagenome; faeces
37920
37838
-
Leu
TAG
[ENA]
¡û
>WENV181275383
OFGJ01000991
[OFGJ] mouse gut metagenome; faeces
5696
5614
-
Leu
TAG
[ENA]
¡û
>WENV181276426
OFGK01004014
[OFGK] mouse gut metagenome; faeces
451
533
+
Leu
TAG
[ENA]
¡û
>WENV181277381
OFGL01001822
[OFGL] mouse gut metagenome; faeces
10414
10332
-
Leu
TAG
[ENA]
¡û
>WENV181278324
OFGM01000789
[OFGM] mouse gut metagenome; faeces
13945
13863
-
Leu
TAG
[ENA]
¡û
>WENV181279529
OFGN01000984
[OFGN] mouse gut metagenome; faeces
10781
10863
+
Leu
TAG
[ENA]
¡û
>WENV181280632
OFGO01000913
[OFGO] mouse gut metagenome; faeces
10726
10808
+
Leu
TAG
[ENA]
¡û
>WENV181281710
OFGP01000385
[OFGP] mouse gut metagenome; faeces
34367
34285
-
Leu
TAG
[ENA]
¡û
>WENV181282947
OFGQ01000194
[OFGQ] mouse gut metagenome; faeces
44632
44550
-
Leu
TAG
[ENA]
¡û
>WENV181284616
OFGR01003016
[OFGR] mouse gut metagenome; faeces
1979
1897
-
Leu
TAG
[ENA]
¡û
>WENV181288732
OFGZ01000772
[OFGZ] mouse gut metagenome; faeces
4460
4378
-
Leu
TAG
[ENA]
¡û
>WENV181290929
OFHB01000707
[OFHB] mouse gut metagenome; faeces
10771
10853
+
Leu
TAG
[ENA]
¡û
>WENV181300258
OFHN01000577
[OFHN] mouse gut metagenome; faeces
10763
10845
+
Leu
TAG
[ENA]
¡û
>WENV181302353
OFHO01012871
[OFHO] mouse gut metagenome; faeces
309
391
+
Leu
TAG
[ENA]
¡û
>WENV181302997
OFHP01000702
[OFHP] mouse gut metagenome; faeces
10646
10564
-
Leu
TAG
[ENA]
¡û
>WENV181494006
OGGB01000048
[OGGB] metagenome; Human gut stool
87995
87913
-
Leu
TAG
[ENA]
¡û
>WENV181535314
OGHU01014479
[OGHU] metagenome; Human gut stool
1090
1008
-
Leu
TAG
[ENA]
¡û
>WENV181550043
OGIL01045456
[OGIL] metagenome; Human gut stool
169
87
-
Leu
TAG
[ENA]
¡û
>WENV181748327
OGQO01001687
[OGQO] human gut metagenome; faeces
10844
10926
+
Leu
TAG
[ENA]
¡û
>WENV181748752
OGQO01006705
[OGQO] human gut metagenome; faeces
5981
6063
+
Leu
TAG
[ENA]
¡û
>WENV181767672
OGRA01000001
[OGRA] human gut metagenome; faeces
174145
174062
-
Leu
TAG
[ENA]
¡û
>WENV181985223
OHAJ01001318
[OHAJ] human gut metagenome; faeces
7577
7495
-
Leu
TAG
[ENA]
¡û
>WENV182109399
OHIN01000286
[OHIN] human gut metagenome; feces
32380
32297
-
Leu
TAG
[ENA]
¡û
>WENV182198075
OHPI01000631
[OHPI] human gut metagenome; feces
3825
3908
+
Leu
TAG
[ENA]
¡û
>WENV182253258
OHTA01000940
[OHTA] human gut metagenome; feces
5963
6046
+
Leu
TAG
[ENA]
¡û
>WENV182397016
OIEM01007041
[OIEM] human gut metagenome; human gut
3257
3175
-
Leu
TAG
[ENA]
¡û
>WENV182637935
OJLA01005318
[OJLA] metagenome; faeces
2753
2835
+
Leu
TAG
[ENA]
¡û
>WENV182639512
OJLA01082009
[OJLA] metagenome; faeces
334
251
-
Leu
TAG
[ENA]
¡û
>WENV182672584
OJNN01008496
[OJNN] human gut metagenome; human gut
254
171
-
Leu
TAG
[ENA]
¡û
>WENV182684561
OJNY01000544
[OJNY] human gut metagenome; human gut
11487
11404
-
Leu
TAG
[ENA]
¡û
>WENV182697810
OJOL01039049
[OJOL] human gut metagenome; human gut
10
93
+
Leu
TAG
[ENA]
¡û
>WENV182903116
OKSX01001678
[OKSX] human gut metagenome; feces
388
471
+
Leu
TAG
[ENA]
¡û
>WENV182948808
OKVP01003536
[OKVP] human gut metagenome; human gut
134
51
-
Leu
TAG
[ENA]
¡û
>WENV183081856
OLJA01019834
[OLJA] human gut metagenome; human gut
522
605
+
Leu
TAG
[ENA]
¡û
>WENV183327664
OLWA01001359
[OLWA] human gut metagenome; faeces
10697
10779
+
Leu
TAG
[ENA]
¡û
>WENV183533817
OOAE01002602
[OOAE] human gut metagenome; human gut
9431
9514
+
Leu
TAG
[ENA]
¡û
>WENV170102487
CEAX01016653
[CEAX] gut metagenome; human stools
105221
105305
+
Leu
TAG
[ENA]
¡û
>WENV170107187
CEBY01031902
[CEBY] gut metagenome; human stools
118922
118838
-
Leu
TAG
[ENA]
¡û
>WENV170110603
CECF01035797
[CECF] gut metagenome; human stools
97
181
+
Leu
TAG
[ENA]
¡û
>WENV170110743
CECF01042357
[CECF] gut metagenome; human stools
3308
3392
+
Leu
TAG
[ENA]
¡û
>W2010249547
CABIXP020000020
Bacteroidota
Porphyromonadaceae bacterium [CABIXP]
2638
2556
-
Leu
TAG
[ENA]
¡û
>W2011366160
RAYW01000032
Unclassified
bacterium J10(2018) [RAYW]
38327
38409
+
Leu
TAG
[ENA]
¡û
>W2011429474
RIAY01000018
Bacteroidota
Isolate-036 (Harlan) [RIAY]
11222
11140
-
Leu
TAG
[ENA]
¡û
>W2011429924
RIBI01000002
Bacteroidota
Isolate-102 (HZI) [RIBI]
383511
383428
-
Leu
TAG
[ENA]
¡û
>W2011430108
RIBM01000008
Bacteroidota
Isolate-113 (HZI) [RIBM]
119495
119413
-
Leu
TAG
[ENA]
¡û
>W2011430178
RIBN01000038
Bacteroidota
Isolate-114 (HZI) [RIBN]
2915
2833
-
Leu
TAG
[ENA]
¡û
>W2011532998
SCEF01000012
Bacteroidota
Isolate-001 (NCI) [SCEF]
48140
48222
+
Leu
TAG
[ENA]
¡û
>W2011672264
SPPC01000031
Bacteroidota
Barnesiella sp. WM24 [SPPC]
499
581
+
Leu
TAG
[ENA]
¡û
>W2011687318
SRYY01000003
Bacteroidota
Muribaculum sp. NM65_B17 [SRYY]
374722
374639
-
Leu
TAG
[ENA]
¡û
>W2011692607
SSTK01000002
Bacteroidota
Muribaculaceae bacterium NM77_A26 [SSTK]
105015
105098
+
Leu
TAG
[ENA]
¡û
>W2012131612
VSMC01000026
Bacteroidota
Muribaculaceae bacterium AM35 [VSMC]
38384
38466
+
Leu
TAG
[ENA]
¡û
>W2110122356
CAJSZO010000022
Bacteroidota
Bacteroidales bacterium [CAJSZO]
61300
61382
+
Leu
TAG
[ENA]
¡û
>W2110122399
CAJSZR010000014
Bacteroidota
Muribaculaceae bacterium [CAJSZR]
38426
38344
-
Leu
TAG
[ENA]
¡û
>W2110122860
CAJTAF010000013
Bacteroidota
Muribaculaceae bacterium [CAJTAF]
38433
38351
-
Leu
TAG
[ENA]
¡û
>W2130008350
CAJMXD010000386
Bacteroidota
Barnesiella sp. CU968 [CAJMXD]
502
584
+
Leu
TAG
[ENA]
¡û
>W1610934993
LUJO01000018
Bacteroidota
Candidatus Homeothermus arabinoxylanisolvens M4 [LUJO]
52137
52219
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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