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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107227 (67 seq.)
>W1711135268
LUYT01000012
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
99692
99777
+
Tyr
GTA
[ENA]
¡û
>W1711135274
LUYT01000030
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
100
183
+
Tyr
GTA
[ENA]
¡û
>W1711502892
MKTD01000002
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
16538
16455
-
Tyr
GTA
[ENA]
¡û
>W1711502897
MKTD01000011
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
224941
224858
-
Tyr
GTA
[ENA]
¡û
>W131227781
AUFL01000002
Bacteroidota
Dysgonomonas capnocytophagoides DSM 22835 [AUFL]
160733
160650
-
Tyr
GTA
[ENA]
¡û
>C016351
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
420529
420614
+
Tyr
GTA
[Ensembl]
¡û
>C016354
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
582556
582638
+
Tyr
GTA
[Ensembl]
¡û
>WENV180103613
OAPA01090769
[OAPA] marine metagenome; ENVO:00002010
32
115
+
Tyr
GTA
[ENA]
¢þ
>WENV180298747
OBJA01581087
[OBJA] soil metagenome; sediment, water from around vicinity
2
85
+
Tyr
GTA
[ENA]
¢þ
>WENV180705523
ODEJ01006971
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2563
2646
+
Tyr
GTA
[ENA]
¢þ
>WENV180738686
ODHD01000276
[ODHD] human metagenome; G_DNA_Supragingival plaque
38729
38646
-
Tyr
GTA
[ENA]
¢þ
>WENV180791585
ODIU01031255
[ODIU] human metagenome; G_DNA_Buccal mucosa
130
47
-
Tyr
GTA
[ENA]
¢þ
>WENV180863628
ODLH01000894
[ODLH] human metagenome; G_DNA_Tongue dorsum
13300
13383
+
Tyr
GTA
[ENA]
¢þ
>WENV180974044
ODUW01047986
[ODUW] human metagenome; G_DNA_Supragingival plaque
364
281
-
Tyr
GTA
[ENA]
¢þ
>WENV180985064
ODVJ01000512
[ODVJ] human metagenome; G_DNA_Tongue dorsum
4424
4341
-
Tyr
GTA
[ENA]
¢þ
>WENV180992287
ODVP01000506
[ODVP] human metagenome; G_DNA_Buccal mucosa
2574
2657
+
Tyr
GTA
[ENA]
¢þ
>WENV181010364
ODWH01001806
[ODWH] human metagenome; G_DNA_Buccal mucosa
1515
1598
+
Tyr
GTA
[ENA]
¢þ
>WENV181052809
ODYG01038599
[ODYG] human metagenome; G_DNA_Tongue dorsum
280
197
-
Tyr
GTA
[ENA]
¢þ
>WENV181069014
ODZZ01008064
[ODZZ] human metagenome; G_DNA_Tongue dorsum
2259
2342
+
Tyr
GTA
[ENA]
¢þ
>WENV181106825
OEEI01000274
[OEEI] human metagenome; G_DNA_Supragingival plaque
11906
11989
+
Tyr
GTA
[ENA]
¢þ
>WENV181156675
OEIE01051716
[OEIE] human metagenome; G_DNA_Supragingival plaque
201
118
-
Tyr
GTA
[ENA]
¢þ
>WENV181923850
OGYL01002257
[OGYL] human gut metagenome; faeces
10642
10559
-
Tyr
GTA
[ENA]
¢þ
>WENV181965263
OGZT01000056
[OGZT] human gut metagenome; faeces
36564
36647
+
Tyr
GTA
[ENA]
¢þ
>WENV182109551
OHIN01001003
[OHIN] human gut metagenome; feces
2675
2592
-
Tyr
GTA
[ENA]
¢þ
>WENV182253247
OHTA01000846
[OHTA] human gut metagenome; feces
7585
7502
-
Tyr
GTA
[ENA]
¢þ
>WENV183480675
OMFJ01001323
[OMFJ] human gut metagenome; feces
8660
8743
+
Tyr
GTA
[ENA]
¢þ
>WENV183746063
POVV01005908
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
236
153
-
Tyr
GTA
[ENA]
¢þ
>WENV170056689
CDZG01011602
[CDZG] gut metagenome; human stools
162
79
-
Tyr
GTA
[ENA]
¢þ
>WENV170056826
CDZG01016313
[CDZG] gut metagenome; human stools
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV170645004
JMBX01000911
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
2061
2146
+
Tyr
GTA
[ENA]
¢þ
>WENV170657018
JTFO01069723
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
849
766
-
Tyr
GTA
[ENA]
¢þ
>WENV170657476
JTFO01163567
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
340
255
-
Tyr
GTA
[ENA]
¢þ
>WENV170658125
JTFP01058176
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
214
297
+
Tyr
GTA
[ENA]
¢þ
>C181004306
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
2954675
2954758
+
Tyr
GTA
-
¡û
>C181004324
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
949707
949624
-
Tyr
GTA
-
¡û
>C181102426
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1534603
1534687
+
Tyr
GTA
-
¡û
>C181102429
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1689426
1689509
+
Tyr
GTA
-
¡û
>C181123625
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
157336
157420
+
Tyr
GTA
-
¡û
>C181123628
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
324779
324862
+
Tyr
GTA
-
¡û
>C191213108
LR134506
Bacteroidota
Porphyromonas cangingivalis NCTC12856 [LR134506]
879471
879554
+
Tyr
GTA
-
¡û
>C191213114
LR134506
Bacteroidota
Porphyromonas cangingivalis NCTC12856 [LR134506]
2060181
2060264
+
Tyr
GTA
-
¡û
>W1910371278
FUFH01000042
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
14840
14924
+
Tyr
GTA
[ENA]
¡û
>W1910371281
FUFH01000042
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
170202
170285
+
Tyr
GTA
[ENA]
¡û
>W1911247399
NSLM01000001
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
109647
109563
-
Tyr
GTA
[ENA]
¡û
>W1911535131
OLMS01000002
Bacteroidota
Parabacteroides pacaensis Marseille-P4001 [OLMS]
933220
933303
+
Tyr
GTA
[ENA]
¡û
>W1911535150
OLMS01000002
Bacteroidota
Parabacteroides pacaensis Marseille-P4001 [OLMS]
1990870
1990787
-
Tyr
GTA
[ENA]
¡û
>W1911541902
OPYL01000001
Bacteroidota
Dysgonomonas sp. Marseille-P4361 [OPYL]
504930
504847
-
Tyr
GTA
[ENA]
¡û
>W1911709108
QPGS01000004
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
92936
93020
+
Tyr
GTA
[ENA]
¡û
>W1911709129
QPGS01000023
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
22537
22454
-
Tyr
GTA
[ENA]
¡û
>W1810573716
QEKY01000005
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
19337
19420
+
Tyr
GTA
[ENA]
¡û
>W1810573741
QEKY01000018
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
15705
15622
-
Tyr
GTA
[ENA]
¡û
>W1511336631
JRAK01000115
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
10573
10656
+
Tyr
GTA
[ENA]
¡û
>W1511336644
JRAK01000143
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
31626
31711
+
Tyr
GTA
[ENA]
¡û
>W1511336756
JRAO01000030
Bacteroidota
Porphyromonas sp. COT-239 OH1446 [JRAO]
14851
14934
+
Tyr
GTA
[ENA]
¡û
>W1511336856
JRAR01000007
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
33304
33219
-
Tyr
GTA
[ENA]
¡û
>W1511343849
JRFB01000011
Bacteroidota
Porphyromonas macacae COT-192 OH2631 [JRFB]
448981
449064
+
Tyr
GTA
[ENA]
¡û
>W1511343862
JRFB01000011
Bacteroidota
Porphyromonas macacae COT-192 OH2631 [JRFB]
357103
357020
-
Tyr
GTA
[ENA]
¡û
>W1511343925
JRFD01000026
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
46930
47015
+
Tyr
GTA
[ENA]
¡û
>W1511343943
JRFD01000047
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
386
469
+
Tyr
GTA
[ENA]
¡û
>W1610946388
LUYT01000012
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
99692
99777
+
Tyr
GTA
[ENA]
¡û
>W1610946394
LUYT01000030
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
100
183
+
Tyr
GTA
[ENA]
¡û
>W1710567485
FOSU01000001
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
516560
516477
-
Tyr
GTA
[ENA]
¡û
>W1710567513
FOSU01000014
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
96112
96029
-
Tyr
GTA
[ENA]
¡û
>W1710576012
FOZR01000008
Bacteroidota
Porphyromonadaceae bacterium NLAE-zl-C104 [FOZR]
42532
42446
-
Tyr
GTA
[ENA]
¡û
>W1710576024
FOZR01000019
Bacteroidota
Porphyromonadaceae bacterium NLAE-zl-C104 [FOZR]
36470
36553
+
Tyr
GTA
[ENA]
¡û
>W1710602920
FUYQ01000007
Bacteroidota
Parabacteroides chartae [FUYQ]
120837
120752
-
Tyr
GTA
[ENA]
¡û
>W1710602944
FUYQ01000019
Bacteroidota
Parabacteroides chartae [FUYQ]
57477
57560
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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