This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10729 (31 seq.)
>W1711179427
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
54702
54793
+
Ser
GCT
[ENA]
¡û
>W131163788
ARAA01000066
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
97442
97533
+
Ser
GCT
[ENA]
¡û
>w026472
ABAY01000057
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
17783
17874
+
Ser
GCT
[ENA]
¡û
>WENV180020583
FTCZ01006617
[FTCZ] metagenome; soil
6305
6396
+
Ser
GCT
[ENA]
¢þ
>W08006133
ABIP01000005
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
182024
182115
+
Ser
GCT
[ENA]
¡û
>C08006469
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
1510361
1510273
-
Ser
GCT
[Ensembl]
¡û
>WENV170681011
LFEF01043119
[LFEF] freshwater metagenome; waterbloom
565
656
+
Ser
GCT
[ENA]
¢þ
>C181180082
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
73998
74089
+
Ser
GCT
-
¡û
>C181180224
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4757951
4757860
-
Ser
GCT
-
¡û
>C09107876
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1066238
1066147
-
Ser
GCT
[Ensembl]
¡û
>W1911708577
QOWC01000160
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
2724
2815
+
Ser
GCT
[ENA]
¡û
>W1810079893
PELK01001449
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
3600
3509
-
Ser
GCT
[ENA]
¡û
>W1511400908
JTHF01000223
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
20359
20268
-
Ser
GCT
[ENA]
¡û
>W1511400948
JTHG01000117
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
9151
9242
+
Ser
GCT
[ENA]
¡û
>W1511507916
JXOD01000369
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
5682
5773
+
Ser
GCT
[ENA]
¡û
>W1511563234
LABX01000050
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
12005
12096
+
Ser
GCT
[ENA]
¡û
>W1511563285
LABY01000004
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
34680
34589
-
Ser
GCT
[ENA]
¡û
>W1511563362
LABZ01000120
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
2197
2106
-
Ser
GCT
[ENA]
¡û
>C161001120
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
30131
30222
+
Ser
GCT
[Ensembl]
¡û
>W1610047427
BBDG01002027
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
166
257
+
Ser
GCT
[ENA]
¡û
>W1610590436
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20269
20178
-
Ser
GCT
[ENA]
¡û
>W1610590496
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
20320
20229
-
Ser
GCT
[ENA]
¡û
>W1610590572
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
20379
20288
-
Ser
GCT
[ENA]
¡û
>W1610987328
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
54702
54793
+
Ser
GCT
[ENA]
¡û
>W1710044032
BBDG01002027
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
166
257
+
Ser
GCT
[ENA]
¡û
>W1710548815
FOEB01000007
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
288254
288163
-
Ser
GCT
[ENA]
¡û
>W1710560705
FONO01000045
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
30358
30267
-
Ser
GCT
[ENA]
¡û
>W1710579072
FPCB01000039
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
53009
53100
+
Ser
GCT
[ENA]
¡û
>W1710709716
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20269
20178
-
Ser
GCT
[ENA]
¡û
>W1710709776
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
20320
20229
-
Ser
GCT
[ENA]
¡û
>W1710709852
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
20379
20288
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK