This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10771 (66 seq.)
>W1711627401
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
160
248
+
Ser
GGA
[ENA]
¡û
>W1711627420
MPLL01000012
Bacillota
Leuconostoc lactis [MPLL]
160
248
+
Ser
GGA
[ENA]
¡û
>W1711627493
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
160
248
+
Ser
GGA
[ENA]
¡û
>W1711627513
MPLN01000014
Bacillota
Leuconostoc lactis [MPLN]
160
248
+
Ser
GGA
[ENA]
¡û
>W1711999776
NDXG01000007
Bacillota
Leuconostoc citreum [NDXG]
244
332
+
Ser
GGA
[ENA]
¡û
>W1711999787
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
85616
85528
-
Ser
GGA
[ENA]
¡û
>C171047447
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
540672
540760
+
Ser
GGA
-
¡û
>C171047463
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
623752
623840
+
Ser
GGA
-
¡û
>C171047503
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
306993
306905
-
Ser
GGA
-
¡û
>WENV180299195
OBJB01000528
[OBJB] human gut metagenome; human gut
20
108
+
Ser
GGA
[ENA]
¢þ
>WENV180564572
OCLE01001809
[OCLE] human gut metagenome; human gut
432
520
+
Ser
GGA
[ENA]
¢þ
>WENV180566395
OCLI01003265
[OCLI] human gut metagenome; human gut
582
670
+
Ser
GGA
[ENA]
¢þ
>WENV181438171
OGDH01015105
[OGDH] metagenome; Human gut stool
525
437
-
Ser
GGA
[ENA]
¢þ
>W141206426
AZME01000081
Bacillota
Staphylococcus sp. DORA_6_22 [AZME]
494
582
+
Ser
GGA
[ENA]
¡û
>WENV182610615
OJJW01000042
[OJJW] metagenome; faeces
47854
47766
-
Ser
GGA
[ENA]
¢þ
>WENV182629055
OJKR01002810
[OJKR] metagenome; surface
1950
1860
-
Ser
GGA
[ENA]
¢þ
>WENV182642844
OJLP01005416
[OJLP] metagenome; surface
187
99
-
Ser
GGA
[ENA]
¢þ
>WENV182646820
OJMD01038235
[OJMD] metagenome; surface
544
634
+
Ser
GGA
[ENA]
¢þ
>C08005972
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
238742
238830
+
Ser
GGA
[Ensembl]
¡û
>C08005991
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1772336
1772248
-
Ser
GGA
[Ensembl]
¡û
>C08006007
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1681372
1681284
-
Ser
GGA
[Ensembl]
¡û
>WENV183167051
OLOY01022289
[OLOY] human gut metagenome; faeces
220
130
-
Ser
GGA
[ENA]
¢þ
>WENV183774811
PPYF01057632
[PPYF] human gut metagenome; stool from patient with Crohn's disease
638
726
+
Ser
GGA
[ENA]
¢þ
>WENV170659575
JXWR01010597
[JXWR] soil metagenome; rice field; ambient CO2
224
136
-
Ser
GGA
[ENA]
¢þ
>W141695526
JMEA01000027
Bacillota
Leuconostoc lactis [JMEA]
20
108
+
Ser
GGA
[ENA]
¡û
>W1910821976
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1167815
1167903
+
Ser
GGA
[ENA]
¡û
>W1910821990
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
907883
907795
-
Ser
GGA
[ENA]
¡û
>W1910822006
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
817781
817693
-
Ser
GGA
[ENA]
¡û
>W1911177177
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
208614
208702
+
Ser
GGA
[ENA]
¡û
>W1911177196
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1706388
1706300
-
Ser
GGA
[ENA]
¡û
>W1911177212
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1624305
1624217
-
Ser
GGA
[ENA]
¡û
>W1911283568
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
159
247
+
Ser
GGA
[ENA]
¡û
>W1911631667
PUFH01000003
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
127
215
+
Ser
GGA
[ENA]
¡û
>W1911631717
PUFH01000008
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
103085
102997
-
Ser
GGA
[ENA]
¡û
>W1911631726
PUFH01000010
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
5336
5424
+
Ser
GGA
[ENA]
¡û
>W1510046235
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
115743
115655
-
Ser
GGA
[ENA]
¡û
>W1510046251
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
18636
18548
-
Ser
GGA
[ENA]
¡û
>W1510046271
CCNH01000002
Bacillota
Leuconostoc citreum [CCNH]
36332
36420
+
Ser
GGA
[ENA]
¡û
>W1510046297
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
191623
191535
-
Ser
GGA
[ENA]
¡û
>C11112811
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1929521
1929433
-
Ser
GGA
[Ensembl]
¡û
>C11112827
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1773562
1773474
-
Ser
GGA
[Ensembl]
¡û
>C11112845
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1684309
1684221
-
Ser
GGA
[Ensembl]
¡û
>W1511468970
JVUU01000032
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
5455
5543
+
Ser
GGA
[ENA]
¡û
>W1511468972
JVUU01000033
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
95
183
+
Ser
GGA
[ENA]
¡û
>W1511468979
JVUU01000034
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
95
183
+
Ser
GGA
[ENA]
¡û
>W1511469041
JVUV01000052
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
5483
5571
+
Ser
GGA
[ENA]
¡û
>W11137122
AEGQ01000050
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
33
121
+
Ser
GGA
[ENA]
¡û
>W11140919
AEMI01000004
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
48
136
+
Ser
GGA
[ENA]
¡û
>W11140967
AEMJ01000077
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
169
81
-
Ser
GGA
[ENA]
¡û
>C161100070
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
843586
843674
+
Ser
GGA
[Ensembl]
¡û
>C161100086
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
947658
947746
+
Ser
GGA
[Ensembl]
¡û
>C161100122
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
621178
621090
-
Ser
GGA
[Ensembl]
¡û
>C161107384
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1941086
1940998
-
Ser
GGA
[Ensembl]
¡û
>C161107400
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1813894
1813806
-
Ser
GGA
[Ensembl]
¡û
>C161107418
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1712174
1712086
-
Ser
GGA
[Ensembl]
¡û
>W121127471
CAGE01000071
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
36
124
+
Ser
GGA
[ENA]
¡û
>W121127518
CAGF01000080
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
170
82
-
Ser
GGA
[ENA]
¡û
>W121127565
CAGG01000044
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
36
124
+
Ser
GGA
[ENA]
¡û
>W1610187899
FBTU01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
5643
5731
+
Ser
GGA
[ENA]
¡û
>C131008271
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
36067
36157
+
Ser
GGA
[Ensembl]
¡û
>C131008289
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
164912
165002
+
Ser
GGA
[Ensembl]
¡û
>C131008319
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
1444831
1444741
-
Ser
GGA
[Ensembl]
¡û
>C131007806
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1868615
1868527
-
Ser
GGA
[Ensembl]
¡û
>C131007822
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1737456
1737368
-
Ser
GGA
[Ensembl]
¡û
>C131007840
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1647678
1647590
-
Ser
GGA
[Ensembl]
¡û
>W1710189515
FBTU01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
5643
5731
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK