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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107878 (29 seq.)
>W1711511621
MLCO01000184
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
14171
14255
+
Tyr
GTA
[ENA]
¡û
>W1711577335
MNPS01000005
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
51662
51577
-
Tyr
GTA
[ENA]
¡û
>W1711577359
MNPT01000002
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
295478
295393
-
Tyr
GTA
[ENA]
¡û
>C171109025
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
804114
804029
-
Tyr
GTA
-
¡û
>WENV181407214
OGCG01010743
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1507
1592
+
Tyr
GTA
[ENA]
¢þ
>W08009499
ABPH01000004
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
22608
22693
+
Tyr
GTA
[ENA]
¡û
>C08005258
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
3695723
3695641
-
Tyr
GTA
[Ensembl]
¡û
>WENV170565115
FAOW01032575
[FAOW] marine metagenome; seawater
175
90
-
Tyr
GTA
[ENA]
¢þ
>WENV170669497
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
282024
281939
-
Tyr
GTA
[ENA]
¢þ
>C181175688
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
1110742
1110827
+
Tyr
GTA
-
¡û
>C191100522
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
460563
460478
-
Tyr
GTA
-
¡û
>C191166462
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
624606
624521
-
Tyr
GTA
-
¡û
>C191166525
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
587010
586925
-
Tyr
GTA
-
¡û
>W141779202
JONP01000011
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
1557
1473
-
Tyr
GTA
[ENA]
¡û
>W1910182355
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
49787
49702
-
Tyr
GTA
[ENA]
¡û
>W1910697243
MEJG01000003
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
278153
278068
-
Tyr
GTA
[ENA]
¡û
>W1910871836
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
426835
426920
+
Tyr
GTA
[ENA]
¡û
>W1910872376
NDFP01000002
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
27197
27112
-
Tyr
GTA
[ENA]
¡û
>C09106298
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
3030211
3030296
+
Tyr
GTA
[Ensembl]
¡û
>W1810044972
LMYH01000003
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
250431
250346
-
Tyr
GTA
[ENA]
¡û
>W1810045054
LMYI01000011
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
63768
63683
-
Tyr
GTA
[ENA]
¡û
>W1810045077
LMYJ01000003
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
250532
250447
-
Tyr
GTA
[ENA]
¡û
>W1810053974
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
56399
56314
-
Tyr
GTA
[ENA]
¡û
>W1810604039
QGLT01000004
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
151578
151493
-
Tyr
GTA
[ENA]
¡û
>C161105587
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1255263
1255178
-
Tyr
GTA
[Ensembl]
¡û
>W1610040906
BAMZ01000005
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
25235
25150
-
Tyr
GTA
[ENA]
¡û
>W1710038104
BAMZ01000005
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
25235
25150
-
Tyr
GTA
[ENA]
¡û
>W1710613510
JATM01000002
Alphaproteobacteria
Bombella intestini [JATM]
119372
119457
+
Tyr
GTA
[ENA]
¡û
>W1710624880
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
33480
33395
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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