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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108171 (105 seq.)
>C171073862
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
380969
381051
+
Tyr
GTA
-
¡û
>C171127836
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
205909
205991
+
Tyr
GTA
-
¡û
>C005207
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
205880
205961
+
Tyr
GTA
[Ensembl]
¡û
>w024152
AAYJ01000007
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
38917
39003
+
Tyr
GTA
[ENA]
¡û
>w020079
AAUP01000016
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
3147
3061
-
Tyr
GTA
[ENA]
¡û
>w016762
AAQO01000012
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
9203
9117
-
Tyr
GTA
[ENA]
¡û
>WENV180295985
OBIZ01517252
[OBIZ] soil metagenome; soil
179
95
-
Tyr
GTA
[ENA]
¢þ
>WENV180352663
OBLQ010326289
[OBLQ] soil metagenome; soil
167
251
+
Tyr
GTA
[ENA]
¢þ
>WENV180369358
OBOG01085547
[OBOG] marine metagenome; seawater
452
368
-
Tyr
GTA
[ENA]
¢þ
>WENV180370254
OBOH01054195
[OBOH] marine metagenome; ENVO:00002010
303
219
-
Tyr
GTA
[ENA]
¢þ
>WENV180733001
ODGY01014124
[ODGY] human metagenome; G_DNA_Supragingival plaque
406
322
-
Tyr
GTA
[ENA]
¢þ
>WENV180750572
ODHS01003804
[ODHS] human metagenome; G_DNA_Supragingival plaque
5623
5707
+
Tyr
GTA
[ENA]
¢þ
>WENV180764948
ODIB01007353
[ODIB] human metagenome; G_DNA_Supragingival plaque
1494
1410
-
Tyr
GTA
[ENA]
¢þ
>WENV180777779
ODIL01098107
[ODIL] human metagenome; G_DNA_Supragingival plaque
73
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180782235
ODIP01043057
[ODIP] human metagenome; G_DNA_Supragingival plaque
69
153
+
Tyr
GTA
[ENA]
¢þ
>WENV180804279
ODJG01001462
[ODJG] human metagenome; G_DNA_Supragingival plaque
10494
10578
+
Tyr
GTA
[ENA]
¢þ
>WENV180809647
ODJK01032099
[ODJK] human metagenome; G_DNA_Subgingival plaque
407
323
-
Tyr
GTA
[ENA]
¢þ
>WENV180834208
ODKD01006528
[ODKD] human metagenome; G_DNA_Supragingival plaque
573
489
-
Tyr
GTA
[ENA]
¢þ
>WENV180835978
ODKE01025428
[ODKE] human metagenome; G_DNA_Supragingival plaque
325
241
-
Tyr
GTA
[ENA]
¢þ
>WENV180843862
ODKN01015029
[ODKN] human metagenome; G_DNA_Supragingival plaque
359
275
-
Tyr
GTA
[ENA]
¢þ
>WENV180845747
ODKT01001887
[ODKT] human metagenome; G_DNA_Supragingival plaque
10404
10488
+
Tyr
GTA
[ENA]
¢þ
>WENV180888780
ODMN01003533
[ODMN] human metagenome; G_DNA_Supragingival plaque
5313
5397
+
Tyr
GTA
[ENA]
¢þ
>WENV180933971
ODTR01008859
[ODTR] human metagenome; G_DNA_Supragingival plaque
1438
1522
+
Tyr
GTA
[ENA]
¢þ
>WENV180934577
ODTS01000498
[ODTS] human metagenome; G_DNA_Subgingival plaque
358
274
-
Tyr
GTA
[ENA]
¢þ
>WENV180958604
ODUL01013096
[ODUL] human metagenome; G_DNA_Supragingival plaque
358
274
-
Tyr
GTA
[ENA]
¢þ
>WENV180983840
ODVF01045875
[ODVF] human metagenome; G_DNA_Supragingival plaque
262
178
-
Tyr
GTA
[ENA]
¢þ
>WENV181009573
ODWE01103183
[ODWE] human metagenome; G_DNA_Supragingival plaque
350
266
-
Tyr
GTA
[ENA]
¢þ
>WENV181019470
ODWU01003630
[ODWU] human metagenome; G_DNA_Supragingival plaque
359
275
-
Tyr
GTA
[ENA]
¢þ
>WENV181051151
ODYD01214626
[ODYD] human metagenome; G_DNA_Supragingival plaque
1
85
+
Tyr
GTA
[ENA]
¢þ
>WENV181063840
ODYP01004103
[ODYP] human metagenome; G_DNA_Supragingival plaque
5867
5951
+
Tyr
GTA
[ENA]
¢þ
>WENV181143549
OEHM01001923
[OEHM] human metagenome; G_DNA_Supragingival plaque
5830
5914
+
Tyr
GTA
[ENA]
¢þ
>WENV181152724
OEIA01004875
[OEIA] human metagenome; G_DNA_Supragingival plaque
358
274
-
Tyr
GTA
[ENA]
¢þ
>WENV181181847
OEJV01000413
[OEJV] human metagenome; G_DNA_Supragingival plaque
3028
3112
+
Tyr
GTA
[ENA]
¢þ
>C08003016
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1850903
1850821
-
Tyr
GTA
[Ensembl]
¡û
>WENV182543880
OJBD01000415
[OJBD] seawater metagenome; Sea water
2480
2396
-
Tyr
GTA
[ENA]
¢þ
>C08003038
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
279779
279861
+
Tyr
GTA
[Ensembl]
¡û
>W141254753
CBTH010000001
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
205950
206032
+
Tyr
GTA
[ENA]
¡û
>WENV182567357
OJEO01000187
[OJEO] seawater metagenome; Sea water
23951
24035
+
Tyr
GTA
[ENA]
¢þ
>WENV182572498
OJFL01014871
[OJFL] seawater metagenome; Sea water
394
310
-
Tyr
GTA
[ENA]
¢þ
>WENV182573023
OJFP01000008
[OJFP] seawater metagenome; Sea water
100333
100249
-
Tyr
GTA
[ENA]
¢þ
>WENV182577172
OJGD01000005
[OJGD] seawater metagenome; Sea water
449615
449699
+
Tyr
GTA
[ENA]
¢þ
>WENV182581103
OJGX01000132
[OJGX] seawater metagenome; Sea water
407
323
-
Tyr
GTA
[ENA]
¢þ
>WENV182581952
OJGZ01000768
[OJGZ] seawater metagenome; Sea water
407
323
-
Tyr
GTA
[ENA]
¢þ
>WENV182586355
OJHK01000117
[OJHK] seawater metagenome; Sea water
70719
70803
+
Tyr
GTA
[ENA]
¢þ
>W141260644
CCAH010000002
Gammaproteobacteria
Coxiella burnetii [CCAH]
169357
169439
+
Tyr
GTA
[ENA]
¡û
>W141260772
CCAK010000036
Gammaproteobacteria
Coxiella burnetii [CCAK]
5743
5825
+
Tyr
GTA
[ENA]
¡û
>W141267624
CCNR01000062
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
479
397
-
Tyr
GTA
[ENA]
¡û
>WENV183055436
OLHC01000238
[OLHC] seawater metagenome; Sea water
96
180
+
Tyr
GTA
[ENA]
¢þ
>WENV183056932
OLHK01000024
[OLHK] seawater metagenome; Sea water
407
323
-
Tyr
GTA
[ENA]
¢þ
>WENV170481816
CEVL01351126
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
950
1034
+
Tyr
GTA
[ENA]
¢þ
>WENV170634455
FYBJ01001404
[FYBJ] marine metagenome; marine
111974
111890
-
Tyr
GTA
[ENA]
¢þ
>W141451659
JFBG01000051
Gammaproteobacteria
Thioalkalivibrio sp. HK1 [JFBG]
36923
37007
+
Tyr
GTA
[ENA]
¡û
>WENV170771159
LXNI01000537
[LXNI] sponge metagenome; marine sponge reef
1791
1875
+
Tyr
GTA
[ENA]
¢þ
>WENV170771860
LXNI01005386
[LXNI] sponge metagenome; marine sponge reef
3057
2973
-
Tyr
GTA
[ENA]
¢þ
>WENV170780897
MAAB01028047
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
442
358
-
Tyr
GTA
[ENA]
¢þ
>WENV170782234
MAAC01009580
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
200398
200482
+
Tyr
GTA
[ENA]
¢þ
>WENV170808530
MDSW01116407
[MDSW] marine metagenome; seawater
160473
160557
+
Tyr
GTA
[ENA]
¢þ
>WENV170868293
MDTB01159345
[MDTB] marine metagenome; seawater
113
32
-
Tyr
GTA
[ENA]
¢þ
>WENV170899196
MDTD01136289
[MDTD] marine metagenome; seawater
44550
44631
+
Tyr
GTA
[ENA]
¢þ
>WENV170914425
MDTE01148363
[MDTE] marine metagenome; seawater
736
652
-
Tyr
GTA
[ENA]
¢þ
>WENV170960559
MKWU01036424
[MKWU] sponge metagenome;
2085
2169
+
Tyr
GTA
[ENA]
¢þ
>WENV170960782
MKWU01052983
[MKWU] sponge metagenome;
550
466
-
Tyr
GTA
[ENA]
¢þ
>C181088368
CP023664
Gammaproteobacteria
Cycloclasticus sp. PY97N [CP023664]
843771
843855
+
Tyr
GTA
-
¡û
>C191012990
CP016990
Gammaproteobacteria
Aeromonas hydrophila ZYAH75 [CP016990]
301122
301206
+
Tyr
GTA
-
¡û
>C191134910
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
479917
479999
+
Tyr
GTA
-
¡û
>W141810520
JPVV01000013
Gammaproteobacteria
Coxiella burnetii [JPVV]
55550
55632
+
Tyr
GTA
[ENA]
¡û
>C141004285
CP005996
Gammaproteobacteria
Cycloclasticus zancles 78-ME [CP005996]
723756
723840
+
Tyr
GTA
[Ensembl]
¡û
>W1911118978
NOLM01000022
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
53773
53691
-
Tyr
GTA
[ENA]
¡û
>W1911119020
NOLN01000021
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
53433
53351
-
Tyr
GTA
[ENA]
¡û
>W1911119028
NOLO01000002
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
168023
168105
+
Tyr
GTA
[ENA]
¡û
>W1911119112
NOLQ01000002
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
168023
168105
+
Tyr
GTA
[ENA]
¡û
>W1911119196
NOLS01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
168021
168103
+
Tyr
GTA
[ENA]
¡û
>W1911119280
NOLU01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
168021
168103
+
Tyr
GTA
[ENA]
¡û
>W1911136663
NOVG01000002
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
167951
168033
+
Tyr
GTA
[ENA]
¡û
>W1911136747
NOVI01000003
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
144185
144267
+
Tyr
GTA
[ENA]
¡û
>W1911136789
NOVJ01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
168023
168105
+
Tyr
GTA
[ENA]
¡û
>W1911244446
NSHJ01000083
Gammaproteobacteria
Coxiella-like endosymbiont [NSHJ]
45227
45144
-
Tyr
GTA
[ENA]
¡û
>W1911584940
PIPN01000002
Gammaproteobacteria
Aliidiomarina sedimenti GBSy1 [PIPN]
124602
124518
-
Tyr
GTA
[ENA]
¡û
>W1911687738
QLIQ01000030
Gammaproteobacteria
Cysteiniphilum litorale DSM 101832 [QLIQ]
14700
14784
+
Tyr
GTA
[ENA]
¡û
>W1911687885
QLIU01000036
Gammaproteobacteria
Cysteiniphilum halobium SYSU SYW-6 [QLIU]
32658
32574
-
Tyr
GTA
[ENA]
¡û
>W1810059863
PDLP01000052
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
9521
9603
+
Tyr
GTA
[ENA]
¡û
>W1810235679
PPFM01000003
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
153325
153407
+
Tyr
GTA
[ENA]
¡û
>W1810235763
PPFO01000003
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
169330
169412
+
Tyr
GTA
[ENA]
¡û
>W1810235823
PPFP01000068
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
8290
8372
+
Tyr
GTA
[ENA]
¡û
>W1810235847
PPFQ01000003
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
169338
169420
+
Tyr
GTA
[ENA]
¡û
>C151077710
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
1479915
1479832
-
Tyr
GTA
[Ensembl]
¡û
>W1510060733
CCXO01000001
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
359163
359245
+
Tyr
GTA
[ENA]
¡û
>W1510064613
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
220327
220409
+
Tyr
GTA
[ENA]
¡û
>C11109059
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2490436
2490520
+
Tyr
GTA
[Ensembl]
¡û
>C11109060
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2490582
2490666
+
Tyr
GTA
[Ensembl]
¡û
>C11109061
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2490729
2490813
+
Tyr
GTA
[Ensembl]
¡û
>C11109062
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2490876
2490960
+
Tyr
GTA
[Ensembl]
¡û
>C11109063
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2490985
2491069
+
Tyr
GTA
[Ensembl]
¡û
>W1511448664
JVAB01000142
Gammaproteobacteria
Cardiobacterium hominis 612_ETAR [JVAB]
403
319
-
Tyr
GTA
[ENA]
¡û
>W1511449094
JVAQ01000026
Gammaproteobacteria
Cardiobacterium hominis 599_SSED [JVAQ]
4639
4723
+
Tyr
GTA
[ENA]
¡û
>W1511449165
JVAR01000087
Gammaproteobacteria
Cardiobacterium hominis 598_FBAL [JVAR]
412
328
-
Tyr
GTA
[ENA]
¡û
>W1511478864
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
254713
254629
-
Tyr
GTA
[ENA]
¡û
>C161017334
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
380016
380098
+
Tyr
GTA
[Ensembl]
¡û
>W1610070362
BCTE01000052
Gammaproteobacteria
Ferrimonas marina NBRC 102583 [BCTE]
4135
4219
+
Tyr
GTA
[ENA]
¡û
>W1710067735
BCTE01000052
Gammaproteobacteria
Ferrimonas marina NBRC 102583 [BCTE]
4135
4219
+
Tyr
GTA
[ENA]
¡û
>W1710084646
BDMN01000026
Gammaproteobacteria
Bathymodiolus platifrons methanotrophic gill symbiont [BDMN]
12269
12353
+
Tyr
GTA
[ENA]
¡û
>W1710586562
FQXG01000015
Gammaproteobacteria
Ferrimonas marina [FQXG]
4387
4471
+
Tyr
GTA
[ENA]
¡û
>W1710588443
FQZJ01000001
Gammaproteobacteria
Cycloclasticus pugetii DSM 27168 [FQZJ]
397756
397672
-
Tyr
GTA
[ENA]
¡û
>W1710597941
FTNN01000012
Gammaproteobacteria
Shewanella morhuae [FTNN]
26059
26143
+
Tyr
GTA
[ENA]
¡û
>W1710597943
FTNN01000012
Gammaproteobacteria
Shewanella morhuae [FTNN]
26443
26527
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK