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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10850 (108 seq.)
>W1711078794
LSNE01000005
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
312973
313064
+
Ser
TGA
[ENA]
¡û
>C015889
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2982052
2981961
-
Ser
TGA
[Ensembl]
¡û
>WENV180362230
OBNW01079261
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
228
137
-
Ser
TGA
[ENA]
¢þ
>W141223750
BAEM01000022
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
171721
171630
-
Ser
TGA
[ENA]
¡û
>W141223899
BAEP01000008
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
72550
72641
+
Ser
TGA
[ENA]
¡û
>W141223900
BAEP01000008
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
72704
72795
+
Ser
TGA
[ENA]
¡û
>WENV182541921
OJAV01000013
[OJAV] seawater metagenome; Sea water
4531
4440
-
Ser
TGA
[ENA]
¢þ
>WENV182542413
OJAY01000735
[OJAY] seawater metagenome; Sea water
4878
4787
-
Ser
TGA
[ENA]
¢þ
>WENV182542414
OJAY01000735
[OJAY] seawater metagenome; Sea water
4722
4631
-
Ser
TGA
[ENA]
¢þ
>WENV182542526
OJAY01010224
[OJAY] seawater metagenome; Sea water
23
114
+
Ser
TGA
[ENA]
¢þ
>WENV182542606
OJAZ01000060
[OJAZ] seawater metagenome; Sea water
38306
38397
+
Ser
TGA
[ENA]
¢þ
>WENV182543479
OJBB01000818
[OJBB] seawater metagenome; Sea water
4828
4919
+
Ser
TGA
[ENA]
¢þ
>WENV182543677
OJBC01000197
[OJBC] seawater metagenome; Sea water
26142
26233
+
Ser
TGA
[ENA]
¢þ
>WENV182543737
OJBC01001200
[OJBC] seawater metagenome; Sea water
4462
4371
-
Ser
TGA
[ENA]
¢þ
>WENV182544136
OJBE01001962
[OJBE] seawater metagenome; Sea water
2769
2678
-
Ser
TGA
[ENA]
¢þ
>WENV182544180
OJBE01003936
[OJBE] seawater metagenome; Sea water
1883
1792
-
Ser
TGA
[ENA]
¢þ
>WENV182544182
OJBE01004620
[OJBE] seawater metagenome; Sea water
1513
1422
-
Ser
TGA
[ENA]
¢þ
>WENV182546434
OJBO01033168
[OJBO] seawater metagenome; Sea water
371
462
+
Ser
TGA
[ENA]
¢þ
>WENV182546799
OJBP01003913
[OJBP] seawater metagenome; Sea water
917
826
-
Ser
TGA
[ENA]
¢þ
>WENV182546800
OJBP01003913
[OJBP] seawater metagenome; Sea water
761
670
-
Ser
TGA
[ENA]
¢þ
>WENV182546995
OJBR01000100
[OJBR] seawater metagenome; Sea water
4267
4176
-
Ser
TGA
[ENA]
¢þ
>WENV182546996
OJBR01000100
[OJBR] seawater metagenome; Sea water
4111
4020
-
Ser
TGA
[ENA]
¢þ
>WENV182547008
OJBR01000130
[OJBR] seawater metagenome; Sea water
44426
44335
-
Ser
TGA
[ENA]
¢þ
>WENV182547009
OJBR01000130
[OJBR] seawater metagenome; Sea water
39997
39906
-
Ser
TGA
[ENA]
¢þ
>WENV182547512
OJBS01015220
[OJBS] seawater metagenome; Sea water
388
477
+
Ser
TGA
[ENA]
¢þ
>WENV182548786
OJBX01000143
[OJBX] seawater metagenome; Sea water
49141
49232
+
Ser
TGA
[ENA]
¢þ
>WENV182549783
OJBZ01000021
[OJBZ] seawater metagenome; Sea water
62366
62457
+
Ser
TGA
[ENA]
¢þ
>WENV182552483
OJCK01000411
[OJCK] seawater metagenome; Sea water
9889
9980
+
Ser
TGA
[ENA]
¢þ
>WENV182554748
OJCW01006377
[OJCW] seawater metagenome; Sea water
1140
1231
+
Ser
TGA
[ENA]
¢þ
>WENV182556932
OJDI01000030
[OJDI] seawater metagenome; Sea water
28734
28643
-
Ser
TGA
[ENA]
¢þ
>WENV182558950
OJDN01021650
[OJDN] seawater metagenome; Sea water
110
201
+
Ser
TGA
[ENA]
¢þ
>WENV182559854
OJDQ01009456
[OJDQ] seawater metagenome; Sea water
964
873
-
Ser
TGA
[ENA]
¢þ
>WENV182559935
OJDQ01029018
[OJDQ] seawater metagenome; Sea water
392
483
+
Ser
TGA
[ENA]
¢þ
>WENV182562418
OJDZ01002642
[OJDZ] seawater metagenome; Sea water
4267
4176
-
Ser
TGA
[ENA]
¢þ
>WENV182565707
OJEH01030927
[OJEH] seawater metagenome; Sea water
768
859
+
Ser
TGA
[ENA]
¢þ
>WENV182566013
OJEI01009481
[OJEI] seawater metagenome; Sea water
592
501
-
Ser
TGA
[ENA]
¢þ
>WENV182571015
OJFG01000050
[OJFG] seawater metagenome; Sea water
58234
58143
-
Ser
TGA
[ENA]
¢þ
>WENV182571995
OJFL01000041
[OJFL] seawater metagenome; Sea water
29086
28995
-
Ser
TGA
[ENA]
¢þ
>WENV182574176
OJFR01000435
[OJFR] seawater metagenome; Sea water
11957
12048
+
Ser
TGA
[ENA]
¢þ
>WENV182574177
OJFR01000435
[OJFR] seawater metagenome; Sea water
12113
12204
+
Ser
TGA
[ENA]
¢þ
>WENV182574530
OJFS01000009
[OJFS] seawater metagenome; Sea water
50360
50451
+
Ser
TGA
[ENA]
¢þ
>WENV182574531
OJFS01000009
[OJFS] seawater metagenome; Sea water
50516
50607
+
Ser
TGA
[ENA]
¢þ
>WENV182574666
OJFS01000365
[OJFS] seawater metagenome; Sea water
4114
4205
+
Ser
TGA
[ENA]
¢þ
>WENV182574667
OJFS01000365
[OJFS] seawater metagenome; Sea water
4957
5048
+
Ser
TGA
[ENA]
¢þ
>WENV182574668
OJFS01000365
[OJFS] seawater metagenome; Sea water
9386
9477
+
Ser
TGA
[ENA]
¢þ
>WENV182575931
OJFX01000593
[OJFX] seawater metagenome; Sea water
6097
6006
-
Ser
TGA
[ENA]
¢þ
>WENV182577105
OJGC01006420
[OJGC] seawater metagenome; Sea water
874
783
-
Ser
TGA
[ENA]
¢þ
>WENV182578410
OJGO01000001
[OJGO] seawater metagenome; Sea water
90045
89954
-
Ser
TGA
[ENA]
¢þ
>WENV182580229
OJGU01020143
[OJGU] seawater metagenome; Sea water
219
128
-
Ser
TGA
[ENA]
¢þ
>WENV182581262
OJGX01001693
[OJGX] seawater metagenome; Sea water
4587
4678
+
Ser
TGA
[ENA]
¢þ
>WENV182582723
OJHC01000001
[OJHC] seawater metagenome; Sea water
330969
331060
+
Ser
TGA
[ENA]
¢þ
>WENV182582724
OJHC01000001
[OJHC] seawater metagenome; Sea water
331125
331216
+
Ser
TGA
[ENA]
¢þ
>WENV182584312
OJHG01000001
[OJHG] seawater metagenome; Sea water
260664
260755
+
Ser
TGA
[ENA]
¢þ
>WENV182584313
OJHG01000001
[OJHG] seawater metagenome; Sea water
260820
260911
+
Ser
TGA
[ENA]
¢þ
>WENV182584352
OJHG01000031
[OJHG] seawater metagenome; Sea water
18410
18501
+
Ser
TGA
[ENA]
¢þ
>WENV182584353
OJHG01000031
[OJHG] seawater metagenome; Sea water
19253
19344
+
Ser
TGA
[ENA]
¢þ
>WENV182584354
OJHG01000031
[OJHG] seawater metagenome; Sea water
23682
23773
+
Ser
TGA
[ENA]
¢þ
>WENV182585390
OJHH01015577
[OJHH] seawater metagenome; Sea water
218
127
-
Ser
TGA
[ENA]
¢þ
>WENV182585756
OJHI01005883
[OJHI] seawater metagenome; Sea water
625
534
-
Ser
TGA
[ENA]
¢þ
>WENV182585795
OJHI01011837
[OJHI] seawater metagenome; Sea water
619
710
+
Ser
TGA
[ENA]
¢þ
>WENV182591373
OJIO01000001
[OJIO] seawater metagenome; Sea water
260662
260753
+
Ser
TGA
[ENA]
¢þ
>WENV182592438
OJIR01000726
[OJIR] seawater metagenome; Sea water
8839
8930
+
Ser
TGA
[ENA]
¢þ
>WENV183055177
OLGX01000061
[OLGX] seawater metagenome; Sea water
66080
66171
+
Ser
TGA
[ENA]
¢þ
>WENV183055178
OLGX01000061
[OLGX] seawater metagenome; Sea water
66236
66327
+
Ser
TGA
[ENA]
¢þ
>WENV183055296
OLGX01001297
[OLGX] seawater metagenome; Sea water
4354
4445
+
Ser
TGA
[ENA]
¢þ
>WENV183057404
OLHL01001586
[OLHL] seawater metagenome; Sea water
2982
2891
-
Ser
TGA
[ENA]
¢þ
>WENV183057461
OLHL01002612
[OLHL] seawater metagenome; Sea water
46
137
+
Ser
TGA
[ENA]
¢þ
>WENV183057736
OLHM01001890
[OLHM] seawater metagenome; Sea water
2880
2789
-
Ser
TGA
[ENA]
¢þ
>WENV183059784
OLHV01004052
[OLHV] seawater metagenome; Sea water
768
859
+
Ser
TGA
[ENA]
¢þ
>WENV183062214
OLID01000601
[OLID] seawater metagenome; Sea water
359
268
-
Ser
TGA
[ENA]
¢þ
>WENV183522325
OMOM01003329
[OMOM] seawater metagenome; Sea water
1800
1709
-
Ser
TGA
[ENA]
¢þ
>WENV183522341
OMOM01006190
[OMOM] seawater metagenome; Sea water
194
103
-
Ser
TGA
[ENA]
¢þ
>WENV183615890
OOEC01001010
[OOEC] marine metagenome; sea ice
217
126
-
Ser
TGA
[ENA]
¢þ
>WENV183621403
OOFU01000283
[OOFU] marine metagenome; sea ice
2662
2753
+
Ser
TGA
[ENA]
¢þ
>WENV183622673
OOFW01001204
[OOFW] marine metagenome; sea ice
1007
916
-
Ser
TGA
[ENA]
¢þ
>WENV183622881
OOFW01033478
[OOFW] marine metagenome; sea ice
293
384
+
Ser
TGA
[ENA]
¢þ
>WENV183623151
OOFX01019327
[OOFX] marine metagenome; sea ice
288
197
-
Ser
TGA
[ENA]
¢þ
>WENV183624271
OOGD01000077
[OOGD] marine metagenome; sea ice
21476
21567
+
Ser
TGA
[ENA]
¢þ
>WENV183624544
OOGD01035918
[OOGD] marine metagenome; sea ice
444
353
-
Ser
TGA
[ENA]
¢þ
>WENV183628673
OOGO01006802
[OOGO] marine metagenome; sea ice
463
372
-
Ser
TGA
[ENA]
¢þ
>WENV183630864
OOGU01005387
[OOGU] marine metagenome; sea ice
1959
2050
+
Ser
TGA
[ENA]
¢þ
>WENV170361647
CETM01020775
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
114
-
Ser
TGA
[ENA]
¢þ
>WENV170647325
JQIA01020751
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1551
1460
-
Ser
TGA
[ENA]
¢þ
>WENV170934185
MDTG01233984
[MDTG] marine metagenome; seawater
400
491
+
Ser
TGA
[ENA]
¢þ
>C191080032
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2364365
2364274
-
Ser
TGA
-
¡û
>C191080033
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2364175
2364084
-
Ser
TGA
-
¡û
>W09103806
AAKP01000075
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
4114
4023
-
Ser
TGA
[ENA]
¡û
>W09103807
AAKP01000075
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
3963
3872
-
Ser
TGA
[ENA]
¡û
>W143004506
BAER01000012
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
2506
2415
-
Ser
TGA
[ENA]
¡û
>W1911585085
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
577379
577470
+
Ser
TGA
[ENA]
¡û
>W1911585328
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
512624
512715
+
Ser
TGA
[ENA]
¡û
>W1810157948
PJCF01000007
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
14817
14726
-
Ser
TGA
[ENA]
¡û
>W1810426178
PYVY01000022
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
50306
50397
+
Ser
TGA
[ENA]
¡û
>W1810426179
PYVY01000022
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
50496
50587
+
Ser
TGA
[ENA]
¡û
>W1810671369
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
512759
512850
+
Ser
TGA
[ENA]
¡û
>C11109474
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2941619
2941528
-
Ser
TGA
[Ensembl]
¡û
>C11109475
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2941463
2941372
-
Ser
TGA
[Ensembl]
¡û
>W1511348367
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
285402
285493
+
Ser
TGA
[ENA]
¡û
>W1511348368
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
285555
285646
+
Ser
TGA
[ENA]
¡û
>W11170576
AFPO01000011
Gammaproteobacteria
Idiomarina sp. A28L [AFPO]
205619
205710
+
Ser
TGA
[ENA]
¡û
>C161071085
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1308332
1308241
-
Ser
TGA
-
¡û
>C161071086
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1301455
1301364
-
Ser
TGA
-
¡û
>C161071087
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1299570
1299479
-
Ser
TGA
-
¡û
>C161086279
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3620081
3619990
-
Ser
TGA
-
¡û
>C161086280
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3613197
3613106
-
Ser
TGA
-
¡û
>C161086281
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3611309
3611218
-
Ser
TGA
-
¡û
>C131007648
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
2410923
2411014
+
Ser
TGA
-
¡û
>W1610917704
LSNE01000005
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
312973
313064
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK