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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108557 (8 seq.)
>W131158390
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
7469
7386
-
Ser
TGA
[ENA]
¡û
>W131162979
AQZJ01000014
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
14461
14376
-
Ser
TGA
[ENA]
¡û
>WENV181842593
OGVT01006579
[OGVT] freshwater metagenome; freshwater
713
798
+
Ser
TGA
[ENA]
¢þ
>C181018647
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
253528
253611
+
Ser
TGA
-
¡û
>C181020896
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1300712
1300629
-
Ser
TGA
-
¡û
>C181020970
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1308130
1308047
-
Ser
TGA
-
¡û
>C181021006
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1298171
1298088
-
Ser
TGA
-
¡û
>C181021154
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1286944
1286861
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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