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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108638 (61 seq.)
>W1711774205
MVIY01000006
Bacillota
Clostridium botulinum D/C [MVIY]
11427
11343
-
Tyr
GTA
[ENA]
¡û
>W1711774207
MVIY01000006
Bacillota
Clostridium botulinum D/C [MVIY]
11217
11133
-
Tyr
GTA
[ENA]
¡û
>W1711774371
MVJB01000005
Bacillota
Clostridium botulinum D/C [MVJB]
145
229
+
Tyr
GTA
[ENA]
¡û
>W1711774428
MVJC01000011
Bacillota
Clostridium botulinum D/C [MVJC]
14767
14851
+
Tyr
GTA
[ENA]
¡û
>W1711774430
MVJC01000011
Bacillota
Clostridium botulinum D/C [MVJC]
14977
15061
+
Tyr
GTA
[ENA]
¡û
>C006261
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2206000
2205916
-
Tyr
GTA
[Ensembl]
¡û
>C006263
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2205790
2205706
-
Tyr
GTA
[Ensembl]
¡û
>WENV180135428
OATK01041482
[OATK] human gut metagenome; faeces
135
53
-
Tyr
GTA
[ENA]
¢þ
>WENV181421511
OGCN01073703
[OGCN] human gut metagenome; human gut
488
570
+
Tyr
GTA
[ENA]
¢þ
>WENV181447658
OGDU01019513
[OGDU] metagenome; Human gut stool
1597
1679
+
Tyr
GTA
[ENA]
¢þ
>WENV181451704
OGDY01012308
[OGDY] metagenome; Human gut stool
1655
1573
-
Tyr
GTA
[ENA]
¢þ
>WENV181505398
OGGK01015415
[OGGK] metagenome; Human gut stool
1886
1968
+
Tyr
GTA
[ENA]
¢þ
>WENV181527938
OGHK01016862
[OGHK] metagenome; Human gut stool
1809
1891
+
Tyr
GTA
[ENA]
¢þ
>WENV181569157
OGJK01035886
[OGJK] metagenome; Human gut stool
84
2
-
Tyr
GTA
[ENA]
¢þ
>WENV181640252
OGNE01012372
[OGNE] metagenome; Human gut stool
764
682
-
Tyr
GTA
[ENA]
¢þ
>W08001219
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
165200
165284
+
Tyr
GTA
[ENA]
¡û
>W08001221
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
165411
165495
+
Tyr
GTA
[ENA]
¡û
>WENV181925184
OGYM01000411
[OGYM] human gut metagenome; faeces
29997
30079
+
Tyr
GTA
[ENA]
¢þ
>WENV182537967
OIXH01026943
[OIXH] human gut metagenome; faeces
1078
996
-
Tyr
GTA
[ENA]
¢þ
>WENV182790736
OJSM01071280
[OJSM] human gut metagenome; human gut
63
145
+
Tyr
GTA
[ENA]
¢þ
>WENV182877572
OKRY01012486
[OKRY] human gut metagenome; faeces
1621
1539
-
Tyr
GTA
[ENA]
¢þ
>WENV183277924
OLSA01003897
[OLSA] human gut metagenome; faeces
8170
8252
+
Tyr
GTA
[ENA]
¢þ
>W141427444
JENK01000047
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
1739
1823
+
Tyr
GTA
[ENA]
¡û
>W141427446
JENK01000047
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
1949
2033
+
Tyr
GTA
[ENA]
¡û
>W141427712
JENO01000050
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
10179
10095
-
Tyr
GTA
[ENA]
¡û
>W141427714
JENO01000050
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
9969
9885
-
Tyr
GTA
[ENA]
¡û
>W141427782
JENP01000015
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
10228
10144
-
Tyr
GTA
[ENA]
¡û
>W141427784
JENP01000015
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
10017
9933
-
Tyr
GTA
[ENA]
¡û
>W141427949
JENR01000097
Bacillota
Clostridium botulinum D str. 16868 [JENR]
25322
25238
-
Tyr
GTA
[ENA]
¡û
>W141427951
JENR01000097
Bacillota
Clostridium botulinum D str. 16868 [JENR]
25114
25030
-
Tyr
GTA
[ENA]
¡û
>W141428037
JENS01000112
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
21241
21157
-
Tyr
GTA
[ENA]
¡û
>W141428039
JENS01000112
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
21031
20947
-
Tyr
GTA
[ENA]
¡û
>W141428132
JENU01000008
Bacillota
Clostridium sp. K25 [JENU]
34002
33918
-
Tyr
GTA
[ENA]
¡û
>W141428134
JENU01000008
Bacillota
Clostridium sp. K25 [JENU]
33794
33710
-
Tyr
GTA
[ENA]
¡û
>W141428257
JENV01000023
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
68345
68429
+
Tyr
GTA
[ENA]
¡û
>W141428259
JENV01000023
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
68553
68637
+
Tyr
GTA
[ENA]
¡û
>W141428322
JENW01000026
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
66631
66715
+
Tyr
GTA
[ENA]
¡û
>W141428324
JENW01000026
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
66839
66923
+
Tyr
GTA
[ENA]
¡û
>W09134458
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
214674
214758
+
Tyr
GTA
[ENA]
¡û
>W09134460
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
214882
214966
+
Tyr
GTA
[ENA]
¡û
>C181136161
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2358127
2358043
-
Tyr
GTA
-
¡û
>C181136163
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2357946
2357862
-
Tyr
GTA
-
¡û
>C181136165
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2357756
2357672
-
Tyr
GTA
-
¡û
>C181136167
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2357569
2357485
-
Tyr
GTA
-
¡û
>C191222123
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2246569
2246485
-
Tyr
GTA
-
¡û
>W1910483272
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
275425
275509
+
Tyr
GTA
[ENA]
¡û
>W1910483274
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
275636
275720
+
Tyr
GTA
[ENA]
¡û
>W1810874269
QUFC01000009
Bacillota
Lachnospiraceae bacterium AM48-27BH [QUFC]
26952
26870
-
Tyr
GTA
[ENA]
¡û
>W1510647818
CVPI01000007
Bacillota
Clostridium niameyense mt5 [CVPI]
1988014
1987930
-
Tyr
GTA
[ENA]
¡û
>W1510882133
JDRX01000042
Bacillota
Clostridium novyi A str. 4570 [JDRX]
10289
10205
-
Tyr
GTA
[ENA]
¡û
>W1510882136
JDRX01000042
Bacillota
Clostridium novyi A str. 4570 [JDRX]
9994
9910
-
Tyr
GTA
[ENA]
¡û
>W1510909009
JENJ01000025
Bacillota
Clostridium novyi A str. 4552 [JENJ]
10239
10155
-
Tyr
GTA
[ENA]
¡û
>W1510909011
JENJ01000025
Bacillota
Clostridium novyi A str. 4552 [JENJ]
10028
9944
-
Tyr
GTA
[ENA]
¡û
>W11146126
AESB01000006
Bacillota
Clostridium botulinum BKT028387 [AESB]
13587
13503
-
Tyr
GTA
[ENA]
¡û
>W11146128
AESB01000006
Bacillota
Clostridium botulinum BKT028387 [AESB]
13379
13295
-
Tyr
GTA
[ENA]
¡û
>W11146225
AESC01000083
Bacillota
Clostridium botulinum V891 [AESC]
1084
1168
+
Tyr
GTA
[ENA]
¡û
>W11146227
AESC01000083
Bacillota
Clostridium botulinum V891 [AESC]
1292
1376
+
Tyr
GTA
[ENA]
¡û
>W1511707670
LGVP01000009
Bacillota
Clostridium botulinum 29401-CD [LGVP]
13579
13495
-
Tyr
GTA
[ENA]
¡û
>W1511707672
LGVP01000009
Bacillota
Clostridium botulinum 29401-CD [LGVP]
13371
13287
-
Tyr
GTA
[ENA]
¡û
>W1710754975
LHYV01000035
Bacillota
Clostridium botulinum [LHYV]
6048
5964
-
Tyr
GTA
[ENA]
¡û
>W1710754977
LHYV01000035
Bacillota
Clostridium botulinum [LHYV]
5840
5756
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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