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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108676 (39 seq.)
>W1711227772
LXVX01000012
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
324983
325067
+
Leu
CAA
[ENA]
¡û
>W1711506054
MKWB01000020
Alphaproteobacteria
Rhizobium sp. 60-20 [MKWB]
343363
343279
-
Leu
CAA
[ENA]
¡û
>W131167113
ARCZ01000002
Alphaproteobacteria
Hoeflea sp. 108 [ARCZ]
57593
57509
-
Leu
CAA
[ENA]
¡û
>WENV180020467
FTCZ01004325
[FTCZ] metagenome; soil
2541
2457
-
Leu
CAA
[ENA]
¢þ
>W141043002
AMFA01000064
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
4254
4338
+
Leu
CAA
[ENA]
¡û
>WENV181223046
OFDC01001384
[OFDC] hot springs metagenome; Water
2337
2421
+
Leu
CAA
[ENA]
¢þ
>WENV181227215
OFDN01003456
[OFDN] hot springs metagenome; Water
6882
6798
-
Leu
CAA
[ENA]
¢þ
>C08000968
AE007870
Alphaproteobacteria
Agrobacterium fabrum str. C58 [AE007869, AE007870]
576115
576199
+
Leu
CAA
[Ensembl]
¡û
>C08001021
AE008689
Alphaproteobacteria
Agrobacterium fabrum [AE008688, AE008689]
576107
576191
+
Leu
CAA
[Ensembl]
¡û
>WENV170192817
CEPG01015861
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1678
1594
-
Leu
CAA
[ENA]
¢þ
>WENV170193258
CEPH01039993
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
111
27
-
Leu
CAA
[ENA]
¢þ
>WENV170574221
FLYM01014915
[FLYM] hot springs metagenome; Sediment
20596
20512
-
Leu
CAA
[ENA]
¢þ
>C181129960
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
1759591
1759675
+
Leu
CAA
-
¡û
>C181170976
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
1759593
1759677
+
Leu
CAA
-
¡û
>C191003767
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
740254
740338
+
Leu
CAA
-
¡û
>C191090933
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
4287988
4287904
-
Leu
CAA
-
¡û
>C191172891
CP039898
Alphaproteobacteria
Agrobacterium tumefaciens CFBP5877 [CP039897, CP039898]
740774
740858
+
Leu
CAA
-
¡û
>W1910199933
FBWM01000027
Alphaproteobacteria
Agrobacterium sp. NCPPB 925 6 str. NCPPB 925 [FBWM]
195114
195030
-
Leu
CAA
[ENA]
¡û
>W1910643360
LUKX01000002
Alphaproteobacteria
Agrobacterium fabrum ATCC 31749 [LUKX]
571134
571218
+
Leu
CAA
[ENA]
¡û
>W1910891723
NEXT01000008
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
108926
108842
-
Leu
CAA
[ENA]
¡û
>W1911494757
OBMI01000001
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
377183
377099
-
Leu
CAA
[ENA]
¡û
>W1911615227
POYI01000037
Alphaproteobacteria
Rhizobium sp. YIC5082 [POYI]
224474
224558
+
Leu
CAA
[ENA]
¡û
>W1911737864
QTTA01000017
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
143598
143514
-
Leu
CAA
[ENA]
¡û
>W1810750652
QOZG01000004
Alphaproteobacteria
Phyllobacterium salinisoli LLAN61 [QOZG]
237885
237969
+
Leu
CAA
[ENA]
¡û
>W1810779174
QQNB01000001
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
743023
742939
-
Leu
CAA
[ENA]
¡û
>W1511344091
JRFJ01000007
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
111732
111816
+
Leu
CAA
[ENA]
¡û
>W11132829
AECL01000070
Alphaproteobacteria
Agrobacterium sp. ATCC 31749 [AECL]
76135
76051
-
Leu
CAA
[ENA]
¡û
>W1511546794
JZLL01000060
Alphaproteobacteria
Agrobacterium tumefaciens F4 [JZLL]
25603
25687
+
Leu
CAA
[ENA]
¡û
>C161043346
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
1866562
1866646
+
Leu
CAA
[Ensembl]
¡û
>C161047026
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
306189
306273
+
Leu
CAA
[Ensembl]
¡û
>W1610056915
BBWQ01000018
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
247078
246994
-
Leu
CAA
[ENA]
¡û
>W1610076446
BCYT01000001
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
176014
176098
+
Leu
CAA
[ENA]
¡û
>W1611011736
LXVX01000012
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
324983
325067
+
Leu
CAA
[ENA]
¡û
>WENV078053
AAFY01013966
Fossil microbial community from Whale Fall (Santa Cruz Basin)
369
455
+
Leu
CAA
[ENA]
>W1710053614
BBWQ01000018
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
247078
246994
-
Leu
CAA
[ENA]
¡û
>W1710074135
BCYT01000001
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
176014
176098
+
Leu
CAA
[ENA]
¡û
>W1710507137
FMVA01000003
Alphaproteobacteria
Rhizobium sp. NFACC06-2 [FMVA]
29700
29616
-
Leu
CAA
[ENA]
¡û
>W1710538968
FNUY01000012
Alphaproteobacteria
Bosea lathyri [FNUY]
159145
159061
-
Leu
CAA
[ENA]
¡û
>W1710588131
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
135956
136040
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK