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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108777 (16 seq.)
>W1711361236
MDLA01000165
Gammaproteobacteria
Chromatiales bacterium (ex Bugula neritina AB1) [MDLA]
4705
4621
-
Leu
TAG
[ENA]
¡û
>W1711372791
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
688521
688605
+
Leu
TAG
[ENA]
¡û
>C171026691
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
685822
685906
+
Leu
TAG
-
¡û
>C171026750
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
808996
809080
+
Leu
TAG
-
¡û
>C171026869
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
1469061
1469145
+
Leu
TAG
-
¡û
>C171026956
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1913003
1912919
-
Leu
TAG
-
¡û
>C171026989
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2022662
2022746
+
Leu
TAG
-
¡û
>C171027093
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
1469064
1469148
+
Leu
TAG
-
¡û
>W131038483
AMGC01000402
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
1332
1248
-
Leu
TAG
[ENA]
¡û
>WENV183664438
ORJL010379098
[ORJL] groundwater metagenome; groundwater
285
369
+
Leu
TAG
[ENA]
¢þ
>WENV170025123
BCQL01223920
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
118
202
+
Leu
TAG
[ENA]
¢þ
>WENV170697239
LGVF01098557
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
55
139
+
Leu
TAG
[ENA]
¢þ
>C191116628
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
1887772
1887856
+
Leu
TAG
-
¡û
>W1911652746
QBEV01000156
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
724
640
-
Leu
TAG
[ENA]
¡û
>C151095299
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2022658
2022742
+
Leu
TAG
-
¡û
>W1511337018
JRAV02000001
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
47843
47927
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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