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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109048 (133 seq.)
>W1710810028
LKGS01000022
Bacillota
Enterococcus faecalis [LKGS]
9420
9503
+
Leu
TAG
[ENA]
¡û
>W131011907
AIIX01000001
Bacillota
Enterococcus faecalis 7330112-3 [AIIX]
3364
3447
+
Leu
TAG
[ENA]
¡û
>W131011946
AIIX01000016
Bacillota
Enterococcus faecalis 7330112-3 [AIIX]
920
837
-
Leu
TAG
[ENA]
¡û
>W131014696
AIRA01000008
Bacillota
Enterococcus faecalis B2867 [AIRA]
2919
3002
+
Leu
TAG
[ENA]
¡û
>W131015194
AIRJ01000005
Bacillota
Enterococcus faecalis B3336 [AIRJ]
5224
5307
+
Leu
TAG
[ENA]
¡û
>W131015233
AIRJ01000032
Bacillota
Enterococcus faecalis B3336 [AIRJ]
259168
259085
-
Leu
TAG
[ENA]
¡û
>W131015673
AIRS01000003
Bacillota
Enterococcus faecalis B4568 [AIRS]
5141
5224
+
Leu
TAG
[ENA]
¡û
>W131015719
AIRS01000021
Bacillota
Enterococcus faecalis B4568 [AIRS]
259016
258933
-
Leu
TAG
[ENA]
¡û
>W131015727
AIRT01000005
Bacillota
Enterococcus faecalis B4638 [AIRT]
3331
3414
+
Leu
TAG
[ENA]
¡û
>W131015769
AIRT01000025
Bacillota
Enterococcus faecalis B4638 [AIRT]
259451
259368
-
Leu
TAG
[ENA]
¡û
>W131016612
AISK01000005
Bacillota
Enterococcus faecalis UAA943 [AISK]
5367
5450
+
Leu
TAG
[ENA]
¡û
>W131016657
AISK01000014
Bacillota
Enterococcus faecalis UAA943 [AISK]
208870
208787
-
Leu
TAG
[ENA]
¡û
>W131026549
AIZS01000029
Bacillota
Enterococcus faecalis UAA948 [AIZS]
3451
3534
+
Leu
TAG
[ENA]
¡û
>W131026593
AIZS01000044
Bacillota
Enterococcus faecalis UAA948 [AIZS]
192539
192456
-
Leu
TAG
[ENA]
¡û
>W131031475
AJDH01000003
Bacillota
Enterococcus faecalis UAA409 [AJDH]
5529
5612
+
Leu
TAG
[ENA]
¡û
>W131031523
AJDH01000010
Bacillota
Enterococcus faecalis UAA409 [AJDH]
920
837
-
Leu
TAG
[ENA]
¡û
>W131033347
AJEO01000004
Bacillota
Enterococcus faecalis YI6-1 [AJEO]
161686
161769
+
Leu
TAG
[ENA]
¡û
>W131033394
AJEO01000014
Bacillota
Enterococcus faecalis YI6-1 [AJEO]
371325
371242
-
Leu
TAG
[ENA]
¡û
>W131188709
ASDB01000005
Bacillota
Enterococcus faecalis T12 [ASDB]
113779
113862
+
Leu
TAG
[ENA]
¡û
>W131188749
ASDB01000018
Bacillota
Enterococcus faecalis T12 [ASDB]
420078
419995
-
Leu
TAG
[ENA]
¡û
>W131188982
ASDG01000002
Bacillota
Enterococcus faecalis T17 [ASDG]
2920
3003
+
Leu
TAG
[ENA]
¡û
>W131189033
ASDG01000017
Bacillota
Enterococcus faecalis T17 [ASDG]
197973
197890
-
Leu
TAG
[ENA]
¡û
>W131190025
ASDZ01000036
Bacillota
Enterococcus faecalis ATCC 6055 [ASDZ]
124497
124414
-
Leu
TAG
[ENA]
¡û
>W131190241
ASEE01000009
Bacillota
Enterococcus faecalis TR161 [ASEE]
4855
4938
+
Leu
TAG
[ENA]
¡û
>W131190285
ASEE01000029
Bacillota
Enterococcus faecalis TR161 [ASEE]
126304
126221
-
Leu
TAG
[ENA]
¡û
>W131208972
ATIJ01000023
Bacillota
Enterococcus faecalis B83616-1 [ATIJ]
403
320
-
Leu
TAG
[ENA]
¡û
>W131231679
AUIQ01000081
Bacillota
Tetragenococcus muriaticus DSM 15685 [AUIQ]
4740
4659
-
Leu
TAG
[ENA]
¡û
>W1711341329
MCFU01000003
Bacillota
Enterococcus faecalis [MCFU]
1527942
1528025
+
Leu
TAG
[ENA]
¡û
>W1711341375
MCFU01000003
Bacillota
Enterococcus faecalis [MCFU]
1229492
1229409
-
Leu
TAG
[ENA]
¡û
>W1711341465
MCFW01000001
Bacillota
Enterococcus faecalis [MCFW]
2220204
2220287
+
Leu
TAG
[ENA]
¡û
>W1711341494
MCFW01000001
Bacillota
Enterococcus faecalis [MCFW]
1921766
1921683
-
Leu
TAG
[ENA]
¡û
>W1711457851
MJBX01000036
Bacillota
Enterococcus faecalis [MJBX]
610
527
-
Leu
TAG
[ENA]
¡û
>W1711705580
MSQM01000081
Bacillota
Enterococcus faecalis [MSQM]
436
353
-
Leu
TAG
[ENA]
¡û
>W1711943340
NBDU01000072
Bacillota
Enterococcus faecalis [NBDU]
200
283
+
Leu
TAG
[ENA]
¡û
>WENV180157845
OAUX01009126
[OAUX] human gut metagenome; faeces
90
173
+
Leu
TAG
[ENA]
¢þ
>WENV180165986
OAVL01007722
[OAVL] human gut metagenome; faeces
98
15
-
Leu
TAG
[ENA]
¢þ
>WENV180225074
OBBL01000433
[OBBL] human gut metagenome; infant 1 DOL 23 gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV180453206
OBXL01001511
[OBXL] human gut metagenome; faeces
516
433
-
Leu
TAG
[ENA]
¢þ
>WENV180459101
OBXW01009998
[OBXW] human gut metagenome; faeces
303
220
-
Leu
TAG
[ENA]
¢þ
>WENV180498969
OCAG01010682
[OCAG] human gut metagenome; faeces
594
511
-
Leu
TAG
[ENA]
¢þ
>WENV180551054
OCJD01000258
[OCJD] human gut metagenome; Infant 1 DOL 19 gut
594
511
-
Leu
TAG
[ENA]
¢þ
>WENV180557296
OCJV01001853
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
516
433
-
Leu
TAG
[ENA]
¢þ
>WENV180569960
OCLR01001075
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV180625144
OCQJ01000305
[OCQJ] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV181216962
OFCG01008461
[OFCG] metagenome; Human gut stool
474
391
-
Leu
TAG
[ENA]
¢þ
>WENV181798636
OGRW01001267
[OGRW] human gut metagenome; fecal sample 7 from infant 2
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV181801574
OGSB01000979
[OGSB] human gut metagenome; fecal sample 5 from infant 3
3463
3546
+
Leu
TAG
[ENA]
¢þ
>WENV181808052
OGSQ01008432
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
36
119
+
Leu
TAG
[ENA]
¢þ
>WENV181810016
OGSU01000332
[OGSU] human gut metagenome; fecal sample 7 from infant 5
235
318
+
Leu
TAG
[ENA]
¢þ
>W141186819
AYKU01000038
Bacillota
Enterococcus faecalis MTmid8 [AYKU]
436
353
-
Leu
TAG
[ENA]
¡û
>WENV182395009
OIEK01000122
[OIEK] human gut metagenome; human gut
37378
37295
-
Leu
TAG
[ENA]
¢þ
>WENV182798216
OJTF01000027
[OJTF] human gut metagenome; human gut
10629
10546
-
Leu
TAG
[ENA]
¢þ
>WENV182816823
OJZG01000693
[OJZG] human gut metagenome; human gut
40
123
+
Leu
TAG
[ENA]
¢þ
>WENV182817271
OJZK01005480
[OJZK] human gut metagenome; human gut
225
142
-
Leu
TAG
[ENA]
¢þ
>WENV182820510
OKAN01000918
[OKAN] human gut metagenome; human gut
99
182
+
Leu
TAG
[ENA]
¢þ
>WENV182820803
OKAP01000260
[OKAP] human gut metagenome; human gut
3536
3619
+
Leu
TAG
[ENA]
¢þ
>WENV182821140
OKAT01000012
[OKAT] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>WENV182823567
OKBV01000351
[OKBV] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182826516
OKCS01000253
[OKCS] human gut metagenome; human gut
1662
1579
-
Leu
TAG
[ENA]
¢þ
>WENV182826772
OKCU01001089
[OKCU] human gut metagenome; human gut
111
28
-
Leu
TAG
[ENA]
¢þ
>WENV182830856
OKEB01000050
[OKEB] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>W141281673
JAHX01000002
Bacillota
Enterococcus faecalis B338 [JAHX]
129705
129788
+
Leu
TAG
[ENA]
¡û
>WENV182835622
OKFO01000654
[OKFO] human gut metagenome; human gut
241
324
+
Leu
TAG
[ENA]
¢þ
>W141281710
JAHX01000006
Bacillota
Enterococcus faecalis B338 [JAHX]
52758
52841
+
Leu
TAG
[ENA]
¡û
>WENV182836658
OKFY01000179
[OKFY] human gut metagenome; human gut
16994
16911
-
Leu
TAG
[ENA]
¢þ
>WENV182840151
OKHK01000157
[OKHK] human gut metagenome; human gut
12549
12466
-
Leu
TAG
[ENA]
¢þ
>WENV182848729
OKKJ01000530
[OKKJ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182848942
OKKM01000080
[OKKM] human gut metagenome; human gut
3683
3766
+
Leu
TAG
[ENA]
¢þ
>WENV182849092
OKKN01000375
[OKKN] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>WENV182854916
OKMX01000118
[OKMX] human gut metagenome; human gut
27745
27662
-
Leu
TAG
[ENA]
¢þ
>WENV182855475
OKNA01000139
[OKNA] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV183371692
OLXV01076144
[OLXV] human gut metagenome; feces
174
257
+
Leu
TAG
[ENA]
¢þ
>WENV183500570
OMGQ01033366
[OMGQ] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV170548709
CXUN01000653
[CXUN] Human gut metagenome genome assembly, contig: mD2_contig003380.; ENVO:feces
758
675
-
Leu
TAG
[ENA]
¢þ
>C181002876
AP017623
Bacillota
Enterococcus faecalis W11 [AP017623]
229888
229971
+
Leu
TAG
-
¡û
>C181002913
AP017623
Bacillota
Enterococcus faecalis W11 [AP017623]
2651972
2651889
-
Leu
TAG
-
¡û
>C181181719
CP029612
Bacillota
Enterococcus faecalis H25 [CP029612]
258006
258089
+
Leu
TAG
-
¡û
>C181181766
CP029612
Bacillota
Enterococcus faecalis H25 [CP029612]
3073267
3073184
-
Leu
TAG
-
¡û
>C191062087
CP028835
Bacillota
Enterococcus faecalis FC [CP028835]
313020
313103
+
Leu
TAG
-
¡û
>C191062134
CP028835
Bacillota
Enterococcus faecalis FC [CP028835]
2929304
2929221
-
Leu
TAG
-
¡û
>C191111933
CP033787
Bacillota
Enterococcus faecalis FDAARGOS_528 [CP033787]
1033799
1033882
+
Leu
TAG
-
¡û
>C191111963
CP033787
Bacillota
Enterococcus faecalis FDAARGOS_528 [CP033787]
756024
755941
-
Leu
TAG
-
¡û
>C191183826
CP040898
Bacillota
Enterococcus faecalis HA-1 [CP040898]
143761
143844
+
Leu
TAG
-
¡û
>C191183842
CP040898
Bacillota
Enterococcus faecalis HA-1 [CP040898]
2762826
2762743
-
Leu
TAG
-
¡û
>W09122780
ACGM01000069
Bacillota
Enterococcus faecalis TX1322 [ACGM]
179
262
+
Leu
TAG
[ENA]
¡û
>W09124123
ACHK01000111
Bacillota
Enterococcus faecalis ATCC 29200 [ACHK]
430
347
-
Leu
TAG
[ENA]
¡û
>W141810455
JPVT01000279
Bacillota
Tetragenococcus muriaticus 3MR10-3 [JPVT]
204
285
+
Leu
TAG
[ENA]
¡û
>W141810509
JPVU01000326
Bacillota
Tetragenococcus muriaticus PMC-11-5 [JPVU]
171
252
+
Leu
TAG
[ENA]
¡û
>W1910001312
APWU01000001
Bacillota
Enterococcus faecalis KACC 91532 [APWU]
379675
379592
-
Leu
TAG
[ENA]
¡û
>W1910007701
BDEF01000151
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
521
440
-
Leu
TAG
[ENA]
¡û
>W1910007866
BDEI01000106
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
246
327
+
Leu
TAG
[ENA]
¡û
>W1910177127
BJDN01000023
Bacillota
Loigolactobacillus binensis 735-2 [BJDN]
279
362
+
Leu
TAG
[ENA]
¡û
>W1910185445
BJTQ01000006
Bacillota
Enterococcus faecalis J209 [BJTQ]
391
474
+
Leu
TAG
[ENA]
¡û
>W1910283388
FRDZ01000003
Bacillota
Enterococcus faecalis [FRDZ]
309362
309279
-
Leu
TAG
[ENA]
¡û
>W1910283398
FRDZ01000006
Bacillota
Enterococcus faecalis [FRDZ]
183620
183537
-
Leu
TAG
[ENA]
¡û
>W1910605885
LEPF01000006
Bacillota
Enterococcus faecalis 209EA1 [LEPF]
235920
235837
-
Leu
TAG
[ENA]
¡û
>W1910605893
LEPF01000007
Bacillota
Enterococcus faecalis 209EA1 [LEPF]
213
296
+
Leu
TAG
[ENA]
¡û
>W1910606110
LEPK01000001
Bacillota
Enterococcus faecalis 250AEA1 [LEPK]
3695
3778
+
Leu
TAG
[ENA]
¡û
>W1910606168
LEPK01000009
Bacillota
Enterococcus faecalis 250AEA1 [LEPK]
37408
37325
-
Leu
TAG
[ENA]
¡û
>W1910606176
LEPK01000012
Bacillota
Enterococcus faecalis 250AEA1 [LEPK]
5171
5254
+
Leu
TAG
[ENA]
¡û
>W1910911000
NHNF01000003
Bacillota
Enterococcus faecalis 12_Tun [NHNF]
301
384
+
Leu
TAG
[ENA]
¡û
>W1911589574
PJWK01000006
Bacillota
Enterococcus faecalis EN872 [PJWK]
257
340
+
Leu
TAG
[ENA]
¡û
>W1911589796
PJWO01000002
Bacillota
Enterococcus faecalis EN782 [PJWO]
385637
385554
-
Leu
TAG
[ENA]
¡û
>W1911590136
PJWU01000009
Bacillota
Enterococcus faecalis EN596 [PJWU]
156149
156066
-
Leu
TAG
[ENA]
¡û
>W1911590403
PJWZ01000001
Bacillota
Enterococcus faecalis EN391b [PJWZ]
257
340
+
Leu
TAG
[ENA]
¡û
>W1911590519
PJXB01000004
Bacillota
Enterococcus faecalis EN377 [PJXB]
257
340
+
Leu
TAG
[ENA]
¡û
>W1911590627
PJXD01000002
Bacillota
Enterococcus faecalis EN363 [PJXD]
287760
287677
-
Leu
TAG
[ENA]
¡û
>W1911590735
PJXF01000006
Bacillota
Enterococcus faecalis EN32 [PJXF]
161606
161523
-
Leu
TAG
[ENA]
¡û
>W1911697121
QNGJ01000003
Bacillota
Enterococcus faecalis 11340 [QNGJ]
359808
359725
-
Leu
TAG
[ENA]
¡û
>W1911697171
QNGK01000007
Bacillota
Enterococcus faecalis 11382 [QNGK]
200579
200496
-
Leu
TAG
[ENA]
¡û
>W1911717501
QPZP01000002
Bacillota
Enterococcus faecalis 2010/1/4 [QPZP]
283611
283528
-
Leu
TAG
[ENA]
¡û
>W1810063240
PDUN01000038
Bacillota
Enterococcus faecalis AHG0090 [PDUN]
241318
241235
-
Leu
TAG
[ENA]
¡û
>W1810316780
PTYM01000079
Bacillota
Enterococcus faecalis CVM N53434 [PTYM]
199
282
+
Leu
TAG
[ENA]
¡û
>W1810317538
PTZA01000085
Bacillota
Enterococcus faecalis CVM N53761 [PTZA]
200
283
+
Leu
TAG
[ENA]
¡û
>W1810317585
PTZB01000081
Bacillota
Enterococcus faecalis CVM N53766 [PTZB]
431
348
-
Leu
TAG
[ENA]
¡û
>W1810593693
QFYJ01000017
Bacillota
Enterococcus faecalis 100-2016 [QFYJ]
279
362
+
Leu
TAG
[ENA]
¡û
>W10124924
AEBO01000054
Bacillota
Enterococcus faecalis TX0309B [AEBO]
431
348
-
Leu
TAG
[ENA]
¡û
>W1511403008
JTKT01000039
Bacillota
Enterococcus faecalis 12 [JTKT]
183427
183344
-
Leu
TAG
[ENA]
¡û
>W1511438463
JUMJ01000112
Bacillota
Enterococcus faecalis 949_EFLS [JUMJ]
431
348
-
Leu
TAG
[ENA]
¡û
>W1511439990
JUOP01000021
Bacillota
Enterococcus faecalis 903_EFLS [JUOP]
431
348
-
Leu
TAG
[ENA]
¡û
>W1511448396
JUZT01000092
Bacillota
Enterococcus faecalis 621_EFLS [JUZT]
3463
3546
+
Leu
TAG
[ENA]
¡û
>W1511463068
JVOE01000084
Bacillota
Enterococcus sp. 255_ESPC [JVOE]
46936
47019
+
Leu
TAG
[ENA]
¡û
>W1511464801
JVQF01000019
Bacillota
Enterococcus faecalis 200_EFLS [JVQF]
147
230
+
Leu
TAG
[ENA]
¡û
>W1511469652
JVVS01000016
Bacillota
Enterococcus faecalis 128_EFLS [JVVS]
24776
24693
-
Leu
TAG
[ENA]
¡û
>W11131811
AEBO01000054
Bacillota
Enterococcus faecalis TX0309B [AEBO]
431
348
-
Leu
TAG
[ENA]
¡û
>W121121036
ALZU01000076
Bacillota
Enterococcus faecalis ERV72 [ALZU]
431
348
-
Leu
TAG
[ENA]
¡û
>C131020710
HF558530
Bacillota
Enterococcus faecalis str. Symbioflor 1 [HF558530]
222589
222672
+
Leu
TAG
[Ensembl]
¡û
>C131020754
HF558530
Bacillota
Enterococcus faecalis str. Symbioflor 1 [HF558530]
2757819
2757736
-
Leu
TAG
[Ensembl]
¡û
>W1610434291
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
4798
4881
+
Leu
TAG
[ENA]
¡û
>W1610674083
LKGS01000022
Bacillota
Enterococcus faecalis [LKGS]
9420
9503
+
Leu
TAG
[ENA]
¡û
>W1710434027
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
4798
4881
+
Leu
TAG
[ENA]
¡û
>W1710573940
FOXW01000014
Bacillota
Desemzia incerta [FOXW]
544
629
+
Leu
TAG
[ENA]
¡û
>W1710660078
JXMK01000096
Bacillota
Enterococcus faecalis [JXMK]
118
201
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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