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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109389 (24 seq.)
>W1711710663
MSZQ01000010
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
122127
122043
-
Leu
TAG
[ENA]
¡û
>W1711711866
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1464658
1464742
+
Leu
TAG
[ENA]
¡û
>W1712110551
NJIH01000013
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
27456
27372
-
Leu
TAG
[ENA]
¡û
>C171098227
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
584947
585031
+
Leu
TAG
-
¡û
>W141237705
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
176
92
-
Leu
TAG
[ENA]
¡û
>WENV183739662
PJUE01053018
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
303
219
-
Leu
TAG
[ENA]
¢þ
>WENV183741191
PJUF01053178
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
159
75
-
Leu
TAG
[ENA]
¢þ
>WENV170136558
CENV01047958
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3988
4072
+
Leu
TAG
[ENA]
¢þ
>WENV170645907
JQGF01000310
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1793
1709
-
Leu
TAG
[ENA]
¢þ
>WENV170655220
JTFN01012286
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1692
1776
+
Leu
TAG
[ENA]
¢þ
>WENV170655238
JTFN01013767
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
701
617
-
Leu
TAG
[ENA]
¢þ
>WENV170655318
JTFN01020484
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
68
152
+
Leu
TAG
[ENA]
¢þ
>WENV170657371
JTFO01137179
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1035
951
-
Leu
TAG
[ENA]
¢þ
>WENV170658256
JTFP01076471
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
558
642
+
Leu
TAG
[ENA]
¢þ
>WENV170705502
LNAO01001148
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3199
3115
-
Leu
TAG
[ENA]
¢þ
>C181053248
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1648297
1648213
-
Leu
TAG
-
¡û
>C181088606
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1358555
1358471
-
Leu
TAG
-
¡û
>C191085285
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1962908
1962824
-
Leu
TAG
-
¡û
>W1911180894
NQOU01000001
Betaproteobacteria
Neopusillimonas maritima 17-4A [NQOU]
81171
81087
-
Leu
TAG
[ENA]
¡û
>W1810759283
QPJH01000004
Betaproteobacteria
Pusillimonas sp. EA3 [QPJH]
147052
147136
+
Leu
TAG
[ENA]
¡û
>W1511537487
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
471128
471212
+
Leu
TAG
[ENA]
¡û
>C161051363
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3740937
3740853
-
Leu
TAG
[Ensembl]
¡û
>W121091202
AKMR01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
148243
148159
-
Leu
TAG
[ENA]
¡û
>W1610921543
LSUO01000028
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
7629
7713
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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