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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10951 (51 seq.)
>W131162567
AQYZ01000003
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
43604
43695
+
Ser
GCT
[ENA]
¡û
>W131237911
AUSE01000057
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
30352
30261
-
Ser
GCT
[ENA]
¡û
>WENV180377060
OBON01000064
[OBON] marine metagenome; sea water
2359
2450
+
Ser
GCT
[ENA]
¢þ
>WENV180377947
OBON01216258
[OBON] marine metagenome; sea water
138
49
-
Ser
GCT
[ENA]
¢þ
>WENV180592220
OCOV01228883
[OCOV] marine metagenome; ENVO:01000301
353
264
-
Ser
GCT
[ENA]
¢þ
>WENV181368459
OFQL01006389
[OFQL] freshwater metagenome; Freshwater Lake
721
632
-
Ser
GCT
[ENA]
¢þ
>WENV181368479
OFQL01009028
[OFQL] freshwater metagenome; Freshwater Lake
50
139
+
Ser
GCT
[ENA]
¢þ
>WENV181369030
OFQN01011136
[OFQN] freshwater metagenome; Freshwater Lake
417
506
+
Ser
GCT
[ENA]
¢þ
>WENV181377203
OFRA01004029
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1308
1217
-
Ser
GCT
[ENA]
¢þ
>WENV181380217
OFRD01042461
[OFRD] wastewater metagenome; Exp Tend CN 100WW
450
361
-
Ser
GCT
[ENA]
¢þ
>WENV181384714
OFRI01006405
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1868
1957
+
Ser
GCT
[ENA]
¢þ
>WENV181384738
OFRI01007989
[OFRI] wastewater metagenome; Exp Tend VB 90WW
189
98
-
Ser
GCT
[ENA]
¢þ
>WENV181386812
OFRL01016558
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
605
516
-
Ser
GCT
[ENA]
¢þ
>WENV181395789
OFSB01003817
[OFSB] freshwater metagenome; Freshwater Lake
495
584
+
Ser
GCT
[ENA]
¢þ
>WENV181399431
OFSE01031726
[OFSE] wastewater metagenome; Exp Tend VB 50WW
786
695
-
Ser
GCT
[ENA]
¢þ
>WENV181400530
OFSF01009401
[OFSF] wastewater metagenome; Exp Tend VB 100WW
70
159
+
Ser
GCT
[ENA]
¢þ
>WENV181400629
OFSF01014230
[OFSF] wastewater metagenome; Exp Tend VB 100WW
455
366
-
Ser
GCT
[ENA]
¢þ
>WENV181843138
OGVU01001473
[OGVU] freshwater metagenome; freshwater
36
127
+
Ser
GCT
[ENA]
¢þ
>WENV181843401
OGVU01012339
[OGVU] freshwater metagenome; freshwater
173
84
-
Ser
GCT
[ENA]
¢þ
>WENV181853234
OGWI01000651
[OGWI] freshwater metagenome; freshwater
769
858
+
Ser
GCT
[ENA]
¢þ
>WENV181854942
OGWK01040731
[OGWK] freshwater metagenome; freshwater
258
167
-
Ser
GCT
[ENA]
¢þ
>WENV170570426
FLOH01000004
[FLOH] marine metagenome; water
835271
835362
+
Ser
GCT
[ENA]
¢þ
>WENV170572726
FLOH01001229
[FLOH] marine metagenome; water
8285
8376
+
Ser
GCT
[ENA]
¢þ
>WENV170600359
FUWD010121469
[FUWD] metagenome; unknown
617
526
-
Ser
GCT
[ENA]
¢þ
>WENV170600398
FUWD010123351
[FUWD] metagenome; unknown
59
148
+
Ser
GCT
[ENA]
¢þ
>WENV170600511
FUWD010130421
[FUWD] metagenome; unknown
375
284
-
Ser
GCT
[ENA]
¢þ
>WENV170602703
FUWD010255370
[FUWD] metagenome; unknown
181
92
-
Ser
GCT
[ENA]
¢þ
>WENV170617918
FUWD012943700
[FUWD] metagenome; unknown
350
439
+
Ser
GCT
[ENA]
¢þ
>WENV170621327
FUWD013055514
[FUWD] metagenome; unknown
946
1035
+
Ser
GCT
[ENA]
¢þ
>WENV170625592
FUWD013201163
[FUWD] metagenome; unknown
207
296
+
Ser
GCT
[ENA]
¢þ
>WENV170629504
FUWD013271946
[FUWD] metagenome; unknown
946
1035
+
Ser
GCT
[ENA]
¢þ
>WENV170633817
FUWD013403380
[FUWD] metagenome; unknown
207
296
+
Ser
GCT
[ENA]
¢þ
>WENV170645615
JNSL01000054
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17178
17087
-
Ser
GCT
[ENA]
¢þ
>WENV170645635
JNSL01000118
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3011
3100
+
Ser
GCT
[ENA]
¢þ
>C181018684
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
302006
302095
+
Ser
GCT
-
¡û
>C181020897
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1289925
1289834
-
Ser
GCT
-
¡û
>C181020971
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1297343
1297252
-
Ser
GCT
-
¡û
>C181021043
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1279377
1279288
-
Ser
GCT
-
¡û
>C181021080
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1272798
1272709
-
Ser
GCT
-
¡û
>C181021093
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
23618
23709
+
Ser
GCT
-
¡û
>C181021155
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1276157
1276066
-
Ser
GCT
-
¡û
>C181021191
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1272830
1272741
-
Ser
GCT
-
¡û
>C181021305
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1215359
1215268
-
Ser
GCT
-
¡û
>SRA1005419
SRR013519.13559
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
134
45
-
Ser
GCT
[SRA]
>WENV057283
AACY023290162
Marine microbial communities from Global Ocean Sampling (GOS)
1051
1142
+
Ser
GCT
[ENA]
>WENV057886
AACY023310198
Marine microbial communities from Global Ocean Sampling (GOS)
683
776
+
Ser
GCT
[ENA]
>WENV058377
AACY023327052
Marine microbial communities from Global Ocean Sampling (GOS)
1407
1314
-
Ser
GCT
[ENA]
>WENV059091
AACY023353451
Marine microbial communities from Global Ocean Sampling (GOS)
1130
1221
+
Ser
GCT
[ENA]
>WENV059099
AACY023353625
Marine microbial communities from Global Ocean Sampling (GOS)
624
533
-
Ser
GCT
[ENA]
>W1610625359
LIAM01000064
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4354
4443
+
Ser
GCT
[ENA]
¡û
>W1710756486
LIAM01000064
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4354
4443
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK