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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109778 (9 seq.)
>W1711766216
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
419828
419743
-
Leu
TAA
[ENA]
¡û
>C171099711
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
384052
383967
-
Leu
TAA
-
¡û
>C171099795
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
439013
438928
-
Leu
TAA
-
¡û
>C171099811
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
883679
883764
+
Leu
TAA
-
¡û
>C171099851
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
883726
883811
+
Leu
TAA
-
¡û
>W141275620
JADC01000012
Alphaproteobacteria
Bartonella clarridgeiae ATCC 51734 [JADC]
19637
19722
+
Leu
TAA
[ENA]
¡û
>C181037944
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
447052
446967
-
Leu
TAA
-
¡û
>C151067989
CP010401
Alphaproteobacteria
Bartonella ancashensis 20.00 [CP010401]
898710
898625
-
Leu
TAA
-
¡û
>C11102672
FN645454
Alphaproteobacteria
Bartonella clarridgeiae 73 [FN645454]
1050203
1050288
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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