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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111261 (53 seq.)
>W1711116571
LUCI01000034
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
15064
14979
-
Tyr
GTA
[ENA]
¡û
>W1711116631
LUCJ01000028
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
5928
6013
+
Tyr
GTA
[ENA]
¡û
>W1711341793
MCGG01000052
Alphaproteobacteria
Magnetovibrio blakemorei [MCGG]
92913
92998
+
Tyr
GTA
[ENA]
¡û
>W1711466188
MJMD01000030
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
11269
11354
+
Tyr
GTA
[ENA]
¡û
>W1711466288
MJMF01000055
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
5967
5882
-
Tyr
GTA
[ENA]
¡û
>C171036191
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
446373
446288
-
Tyr
GTA
-
¡û
>C171120251
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
403890
403975
+
Tyr
GTA
-
¡û
>C171120308
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
400319
400404
+
Tyr
GTA
-
¡û
>C171126407
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
400317
400402
+
Tyr
GTA
-
¡û
>W131176036
ARJS01000044
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
10272
10187
-
Tyr
GTA
[ENA]
¡û
>W141226213
BAJW01000060
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
12354
12269
-
Tyr
GTA
[ENA]
¡û
>WENV182556827
OJDH01000186
[OJDH] seawater metagenome; Sea water
32445
32360
-
Tyr
GTA
[ENA]
¢þ
>WENV182575541
OJFV01000044
[OJFV] seawater metagenome; Sea water
97415
97330
-
Tyr
GTA
[ENA]
¢þ
>W141428599
JEOA01000002
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
337128
337213
+
Tyr
GTA
[ENA]
¡û
>WENV170783576
MAAC01017969
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
587
502
-
Tyr
GTA
[ENA]
¢þ
>C181088278
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
665555
665640
+
Tyr
GTA
-
¡û
>C181193677
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
932959
932874
-
Tyr
GTA
-
¡û
>W1910007913
BDER01000015
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
128786
128701
-
Tyr
GTA
[ENA]
¡û
>W1910008018
BDET01000025
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
3195
3110
-
Tyr
GTA
[ENA]
¡û
>W1910008178
BDEW01000024
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
9223
9138
-
Tyr
GTA
[ENA]
¡û
>W1910008333
BDEZ01000008
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
6307
6222
-
Tyr
GTA
[ENA]
¡û
>W1910182311
BJMU01000001
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
508077
508162
+
Tyr
GTA
[ENA]
¡û
>C141012371
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
2420017
2419932
-
Tyr
GTA
[Ensembl]
¡û
>W1910657458
MAPU01000016
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
61600
61685
+
Tyr
GTA
[ENA]
¡û
>W1910695607
MDVY01000181
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
2075
2160
+
Tyr
GTA
[ENA]
¡û
>W1910990745
NKUD01000034
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
10163
10078
-
Tyr
GTA
[ENA]
¡û
>W1910990775
NKUE01000008
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
117988
118073
+
Tyr
GTA
[ENA]
¡û
>W1910990836
NKUF01000039
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
13639
13554
-
Tyr
GTA
[ENA]
¡û
>W1810069717
PEBQ01000144
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
1337
1252
-
Tyr
GTA
[ENA]
¡û
>W1810223508
POTC01000103
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
1858
1943
+
Tyr
GTA
[ENA]
¡û
>W1810268373
PRCW01000004
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
57837
57752
-
Tyr
GTA
[ENA]
¡û
>C10100692
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
889018
888933
-
Tyr
GTA
[Ensembl]
¡û
>C10100863
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
889012
888927
-
Tyr
GTA
[Ensembl]
¡û
>C10101034
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
889012
888927
-
Tyr
GTA
[Ensembl]
¡û
>C10101091
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
889012
888927
-
Tyr
GTA
[Ensembl]
¡û
>W1511271163
JOKL01000082
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
37274
37189
-
Tyr
GTA
[ENA]
¡û
>W11149321
AEUP01000023
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
193985
194070
+
Tyr
GTA
[ENA]
¡û
>C161001933
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
834707
834622
-
Tyr
GTA
-
¡û
>WENV058448
AACY023329616
Marine microbial communities from Global Ocean Sampling (GOS)
1016
929
-
Tyr
GTA
[ENA]
>W1610040843
BAMX01000014
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
209586
209501
-
Tyr
GTA
[ENA]
¡û
>W1610040868
BAMY01000011
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
158619
158534
-
Tyr
GTA
[ENA]
¡û
>W121122986
BACG01000001
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
206821
206906
+
Tyr
GTA
[ENA]
¡û
>W121126886
CADO01000139
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
128632
128547
-
Tyr
GTA
[ENA]
¡û
>W121126929
CADQ01000101
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
6268
6183
-
Tyr
GTA
[ENA]
¡û
>W1610624952
LHZV01000063
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
20921
21006
+
Tyr
GTA
[ENA]
¡û
>W1610927930
LUCI01000034
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
15064
14979
-
Tyr
GTA
[ENA]
¡û
>W1610927990
LUCJ01000028
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
5928
6013
+
Tyr
GTA
[ENA]
¡û
>W1710038041
BAMX01000014
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
209586
209501
-
Tyr
GTA
[ENA]
¡û
>W1710038066
BAMY01000011
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
158619
158534
-
Tyr
GTA
[ENA]
¡û
>W1710624471
JOOY01000031
Alphaproteobacteria
Acetobacter orientalis [JOOY]
3533
3618
+
Tyr
GTA
[ENA]
¡û
>W1710624629
JOPC01000016
Alphaproteobacteria
Acetobacter persici [JOPC]
487434
487519
+
Tyr
GTA
[ENA]
¡û
>W1710624919
JOPK01000013
Alphaproteobacteria
Acetobacter orientalis [JOPK]
41664
41579
-
Tyr
GTA
[ENA]
¡û
>W1710756070
LHZV01000063
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
20921
21006
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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