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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11157 (95 seq.)
>W1710809784
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
216588
216679
+
Ser
GCT
[ENA]
¡û
>W1710821335
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
533753
533662
-
Ser
GCT
[ENA]
¡û
>W131221635
AUAQ01000011
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
166450
166541
+
Ser
GCT
[ENA]
¡û
>C005523
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
204649
204737
+
Ser
GCT
[Ensembl]
¡û
>WENV180010276
FLSC01449359
[FLSC] metagenome; saliva
10
101
+
Ser
GCT
[ENA]
¢þ
>WENV180011874
FLSK01075270
[FLSK] metagenome; saliva
128
219
+
Ser
GCT
[ENA]
¢þ
>W141008931
AHAE01000078
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
25716
25625
-
Ser
GCT
[ENA]
¡û
>WENV180698632
ODDH01047345
[ODDH] human metagenome; G_DNA_Buccal mucosa
207
298
+
Ser
GCT
[ENA]
¢þ
>WENV180726166
ODGS01043904
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
248
339
+
Ser
GCT
[ENA]
¢þ
>WENV180726753
ODGU01000424
[ODGU] human metagenome; G_DNA_Supragingival plaque
5324
5233
-
Ser
GCT
[ENA]
¢þ
>WENV180732226
ODGY01000005
[ODGY] human metagenome; G_DNA_Supragingival plaque
64810
64719
-
Ser
GCT
[ENA]
¢þ
>WENV180735643
ODHB01000188
[ODHB] human metagenome; G_DNA_Supragingival plaque
22779
22870
+
Ser
GCT
[ENA]
¢þ
>WENV180738538
ODHD01000077
[ODHD] human metagenome; G_DNA_Supragingival plaque
83719
83810
+
Ser
GCT
[ENA]
¢þ
>WENV180750506
ODHS01002979
[ODHS] human metagenome; G_DNA_Supragingival plaque
6768
6859
+
Ser
GCT
[ENA]
¢þ
>WENV180755024
ODHU01008118
[ODHU] human metagenome; G_DNA_Supragingival plaque
505
596
+
Ser
GCT
[ENA]
¢þ
>WENV180764514
ODIB01000021
[ODIB] human metagenome; G_DNA_Supragingival plaque
250
341
+
Ser
GCT
[ENA]
¢þ
>WENV180781436
ODIP01000048
[ODIP] human metagenome; G_DNA_Supragingival plaque
10461
10370
-
Ser
GCT
[ENA]
¢þ
>WENV180796181
ODJB01001777
[ODJB] human metagenome; G_DNA_Supragingival plaque
169
78
-
Ser
GCT
[ENA]
¢þ
>WENV180800519
ODJD01000091
[ODJD] human metagenome; G_DNA_Supragingival plaque
18879
18788
-
Ser
GCT
[ENA]
¢þ
>WENV180803845
ODJG01000105
[ODJG] human metagenome; G_DNA_Supragingival plaque
36611
36520
-
Ser
GCT
[ENA]
¢þ
>WENV180809527
ODJK01022888
[ODJK] human metagenome; G_DNA_Subgingival plaque
272
363
+
Ser
GCT
[ENA]
¢þ
>WENV180812896
ODJO01000002
[ODJO] human metagenome; G_DNA_Supragingival plaque
227421
227512
+
Ser
GCT
[ENA]
¢þ
>WENV180822227
ODJT01000103
[ODJT] human metagenome; G_DNA_Supragingival plaque
24614
24523
-
Ser
GCT
[ENA]
¢þ
>WENV180823578
ODJW01061676
[ODJW] human metagenome; G_DNA_Supragingival plaque
169
78
-
Ser
GCT
[ENA]
¢þ
>WENV180824272
ODJX01002246
[ODJX] human metagenome; G_DNA_Supragingival plaque
249
340
+
Ser
GCT
[ENA]
¢þ
>WENV180831992
ODKC01000314
[ODKC] human metagenome; G_DNA_Supragingival plaque
23007
23098
+
Ser
GCT
[ENA]
¢þ
>WENV180832940
ODKC01008333
[ODKC] human metagenome; G_DNA_Supragingival plaque
3433
3524
+
Ser
GCT
[ENA]
¢þ
>WENV180834182
ODKD01005630
[ODKD] human metagenome; G_DNA_Supragingival plaque
1106
1197
+
Ser
GCT
[ENA]
¢þ
>WENV180842860
ODKN01000041
[ODKN] human metagenome; G_DNA_Supragingival plaque
12894
12803
-
Ser
GCT
[ENA]
¢þ
>WENV180847555
ODKT01106986
[ODKT] human metagenome; G_DNA_Supragingival plaque
228
137
-
Ser
GCT
[ENA]
¢þ
>WENV180853454
ODKW01120495
[ODKW] human metagenome; G_DNA_Tongue dorsum
165
256
+
Ser
GCT
[ENA]
¢þ
>WENV180859145
ODLD01000032
[ODLD] human metagenome; G_DNA_Supragingival plaque
101700
101791
+
Ser
GCT
[ENA]
¢þ
>WENV180875426
ODLQ01155563
[ODLQ] human metagenome; G_DNA_Tongue dorsum
131
40
-
Ser
GCT
[ENA]
¢þ
>WENV180881332
ODMA01000015
[ODMA] human metagenome; G_DNA_Supragingival plaque
13077
13168
+
Ser
GCT
[ENA]
¢þ
>WENV180887960
ODMN01000006
[ODMN] human metagenome; G_DNA_Supragingival plaque
113109
113200
+
Ser
GCT
[ENA]
¢þ
>WENV180921842
ODTJ01000508
[ODTJ] human metagenome; G_DNA_Supragingival plaque
183
92
-
Ser
GCT
[ENA]
¢þ
>WENV180923536
ODTK01000016
[ODTK] human metagenome; G_DNA_Supragingival plaque
4920
4829
-
Ser
GCT
[ENA]
¢þ
>WENV180927252
ODTM01000102
[ODTM] human metagenome; G_DNA_Supragingival plaque
45134
45225
+
Ser
GCT
[ENA]
¢þ
>WENV180933726
ODTR01001662
[ODTR] human metagenome; G_DNA_Supragingival plaque
6768
6859
+
Ser
GCT
[ENA]
¢þ
>WENV180934693
ODTS01001211
[ODTS] human metagenome; G_DNA_Subgingival plaque
6790
6881
+
Ser
GCT
[ENA]
¢þ
>WENV180938426
ODTX01001886
[ODTX] human metagenome; G_DNA_Supragingival plaque
5257
5166
-
Ser
GCT
[ENA]
¢þ
>WENV180943739
ODUC01002168
[ODUC] human metagenome; G_DNA_Supragingival plaque
908
817
-
Ser
GCT
[ENA]
¢þ
>WENV180951476
ODUH01025633
[ODUH] human metagenome; G_DNA_Subgingival plaque
249
340
+
Ser
GCT
[ENA]
¢þ
>WENV180958322
ODUL01002833
[ODUL] human metagenome; G_DNA_Supragingival plaque
256
347
+
Ser
GCT
[ENA]
¢þ
>WENV180963866
ODUO01000013
[ODUO] human metagenome; G_DNA_Supragingival plaque
21624
21715
+
Ser
GCT
[ENA]
¢þ
>WENV180973125
ODUW01001335
[ODUW] human metagenome; G_DNA_Supragingival plaque
8098
8189
+
Ser
GCT
[ENA]
¢þ
>WENV180975411
ODUY01006188
[ODUY] human metagenome; G_DNA_Supragingival plaque
3271
3362
+
Ser
GCT
[ENA]
¢þ
>WENV180980237
ODVE01000004
[ODVE] human metagenome; G_DNA_Supragingival plaque
115312
115403
+
Ser
GCT
[ENA]
¢þ
>WENV180982738
ODVF01000458
[ODVF] human metagenome; G_DNA_Supragingival plaque
1039
948
-
Ser
GCT
[ENA]
¢þ
>WENV180998048
ODVT01000005
[ODVT] human metagenome; G_DNA_Buccal mucosa
113109
113200
+
Ser
GCT
[ENA]
¢þ
>WENV181002204
ODVX01000075
[ODVX] human metagenome; G_DNA_Supragingival plaque
71829
71920
+
Ser
GCT
[ENA]
¢þ
>WENV181007620
ODWE01000302
[ODWE] human metagenome; G_DNA_Supragingival plaque
17535
17626
+
Ser
GCT
[ENA]
¢þ
>WENV181012386
ODWK01000127
[ODWK] human metagenome; G_DNA_Supragingival plaque
4022
3931
-
Ser
GCT
[ENA]
¢þ
>WENV181018716
ODWU01000042
[ODWU] human metagenome; G_DNA_Supragingival plaque
62740
62649
-
Ser
GCT
[ENA]
¢þ
>WENV181029161
ODXF01000003
[ODXF] human metagenome; G_DNA_Supragingival plaque
84930
85021
+
Ser
GCT
[ENA]
¢þ
>WENV181049832
ODYD01002556
[ODYD] human metagenome; G_DNA_Supragingival plaque
606
515
-
Ser
GCT
[ENA]
¢þ
>WENV181063079
ODYP01000055
[ODYP] human metagenome; G_DNA_Supragingival plaque
167
76
-
Ser
GCT
[ENA]
¢þ
>WENV181067262
ODZI01010859
[ODZI] human metagenome; G_DNA_Supragingival plaque
167
76
-
Ser
GCT
[ENA]
¢þ
>WENV181075547
OEAP01000027
[OEAP] human metagenome; G_DNA_Supragingival plaque
14493
14584
+
Ser
GCT
[ENA]
¢þ
>WENV181079030
OEAS01001479
[OEAS] human metagenome; G_DNA_Supragingival plaque
13266
13357
+
Ser
GCT
[ENA]
¢þ
>WENV181082917
OEAV01001299
[OEAV] human metagenome; G_DNA_Supragingival plaque
12089
12180
+
Ser
GCT
[ENA]
¢þ
>WENV181090221
OEBC01000027
[OEBC] human metagenome; G_DNA_Supragingival plaque
189
98
-
Ser
GCT
[ENA]
¢þ
>WENV181106610
OEEI01000008
[OEEI] human metagenome; G_DNA_Supragingival plaque
227421
227512
+
Ser
GCT
[ENA]
¢þ
>WENV181121864
OEFL01024420
[OEFL] human metagenome; G_DNA_Supragingival plaque
169
78
-
Ser
GCT
[ENA]
¢þ
>WENV181142916
OEHM01000008
[OEHM] human metagenome; G_DNA_Supragingival plaque
179068
178977
-
Ser
GCT
[ENA]
¢þ
>WENV181145839
OEHQ01000150
[OEHQ] human metagenome; G_DNA_Supragingival plaque
9533
9442
-
Ser
GCT
[ENA]
¢þ
>WENV181151956
OEIA01000002
[OEIA] human metagenome; G_DNA_Supragingival plaque
274379
274288
-
Ser
GCT
[ENA]
¢þ
>WENV181156402
OEIE01014046
[OEIE] human metagenome; G_DNA_Supragingival plaque
687
596
-
Ser
GCT
[ENA]
¢þ
>WENV181158646
OEIH01004727
[OEIH] human metagenome; G_DNA_Supragingival plaque
90
-1
-
Ser
GCT
[ENA]
¢þ
>WENV181159041
OEIH01033793
[OEIH] human metagenome; G_DNA_Supragingival plaque
169
78
-
Ser
GCT
[ENA]
¢þ
>WENV181160670
OEIK01023126
[OEIK] human metagenome; G_DNA_Supragingival plaque
626
717
+
Ser
GCT
[ENA]
¢þ
>WENV181177085
OEJS01000004
[OEJS] human metagenome; G_DNA_Supragingival plaque
21624
21715
+
Ser
GCT
[ENA]
¢þ
>WENV181178974
OEJT01000800
[OEJT] human metagenome; G_DNA_Supragingival plaque
797
706
-
Ser
GCT
[ENA]
¢þ
>WENV181181556
OEJV01000002
[OEJV] human metagenome; G_DNA_Supragingival plaque
229304
229213
-
Ser
GCT
[ENA]
¢þ
>W141243968
CAJZ01000195
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
6877
6968
+
Ser
GCT
[ENA]
¡û
>WENV183508083
OMHB01000160
[OMHB] human oral metagenome; human oral
2129
2220
+
Ser
GCT
[ENA]
¢þ
>WENV183508440
OMHD01002244
[OMHD] human oral metagenome; human oral
922
1011
+
Ser
GCT
[ENA]
¢þ
>WENV183508982
OMHG01001105
[OMHG] human oral metagenome; human oral
250
341
+
Ser
GCT
[ENA]
¢þ
>WENV183509368
OMHI01000208
[OMHI] human oral metagenome; human oral
257
348
+
Ser
GCT
[ENA]
¢þ
>WENV183510086
OMHL01008548
[OMHL] human oral metagenome; human oral
198
289
+
Ser
GCT
[ENA]
¢þ
>WENV183510598
OMHP01002302
[OMHP] human oral metagenome; human oral
267
358
+
Ser
GCT
[ENA]
¢þ
>WENV183510678
OMHQ01002172
[OMHQ] human oral metagenome; human oral
971
880
-
Ser
GCT
[ENA]
¢þ
>WENV183510844
OMHS01004188
[OMHS] human oral metagenome; human oral
534
625
+
Ser
GCT
[ENA]
¢þ
>WENV183511149
OMIA01000459
[OMIA] human oral metagenome; human oral
105
14
-
Ser
GCT
[ENA]
¢þ
>WENV170687164
LFRM01180221
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
444
533
+
Ser
GCT
[ENA]
¢þ
>C181001589
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
357648
357737
+
Ser
GCT
-
¡û
>C191213045
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
1105919
1105828
-
Ser
GCT
-
¡û
>W09127919
ACLI01000105
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
58359
58270
-
Ser
GCT
[ENA]
¡û
>W09134369
ACSH01000015
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
151530
151439
-
Ser
GCT
[ENA]
¡û
>W1810155032
PJAF01000005
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
22303
22394
+
Ser
GCT
[ENA]
¡û
>C151084376
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
142124
142213
+
Ser
GCT
[Ensembl]
¡û
>W1511595778
LBNF01000071
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
3744
3653
-
Ser
GCT
[ENA]
¡û
>C131005336
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
2502855
2502764
-
Ser
GCT
[Ensembl]
¡û
>W1610673839
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
216588
216679
+
Ser
GCT
[ENA]
¡û
>W1610685297
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
533753
533662
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK