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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112303 (8 seq.)
>C181115555
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1801984
1802069
+
Leu
CAA
-
¡û
>C191031558
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1767125
1767210
+
Leu
CAA
-
¡û
>C191031613
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1801910
1801995
+
Leu
CAA
-
¡û
>C191072224
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1801980
1802065
+
Leu
CAA
-
¡û
>ENV09002513
ADGC01004022
Wallaby gut metagenome MeugComb_C1
569
654
+
Leu
CAA
[ENA]
¡û
>W10115307
ADJQ01000027
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
5405
5320
-
Leu
CAA
[ENA]
¡û
>C11108751
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1801984
1802069
+
Leu
CAA
[Ensembl]
¡û
>W11118893
ADJQ01000027
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
5405
5320
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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