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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112307 (14 seq.)
>W131218400
ATXQ01000004
Gammaproteobacteria
Denitrificimonas caeni DSM 24390 [ATXQ]
172591
172505
-
Leu
CAA
[ENA]
¡û
>WENV170012470
ASRK01001777
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1350
1264
-
Leu
CAA
[ENA]
¢þ
>WENV170687675
LFRM01204984
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7971
8057
+
Leu
CAA
[ENA]
¢þ
>WENV170720005
LSQX01137234
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7114
7200
+
Leu
CAA
[ENA]
¢þ
>C151093916
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
910935
911021
+
Leu
CAA
-
¡û
>C151093969
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
831966
832052
+
Leu
CAA
-
¡û
>C151094035
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
2121674
2121760
+
Leu
CAA
-
¡û
>C151094073
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
469684
469770
+
Leu
CAA
-
¡û
>C151094162
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
202126
202040
-
Leu
CAA
-
¡û
>C151094171
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
573055
573141
+
Leu
CAA
-
¡û
>C151094222
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
465814
465900
+
Leu
CAA
-
¡û
>C161041357
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
504824
504910
+
Leu
CAA
[Ensembl]
¡û
>W1610607237
LFTS01000160
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
7971
8057
+
Leu
CAA
[ENA]
¡û
>W1710728524
LFTS01000160
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
7971
8057
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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