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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112442 (66 seq.)
>W1710864108
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
322672
322588
-
Leu
GAG
[ENA]
¡û
>W1710866680
LMHQ01000030
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
26375
26291
-
Leu
GAG
[ENA]
¡û
>W1710868712
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
879326
879410
+
Leu
GAG
[ENA]
¡û
>W1710872421
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
683625
683709
+
Leu
GAG
[ENA]
¡û
>W1711503059
MKTG01000098
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
35066
34982
-
Leu
GAG
[ENA]
¡û
>W131066624
ANOY01000028
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
19439
19355
-
Leu
GAG
[ENA]
¡û
>W1712102801
NINX01000035
Betaproteobacteria
Pigmentiphaga sp. NML030171 [NINX]
210235
210319
+
Leu
GAG
[ENA]
¡û
>C171118071
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
2870597
2870513
-
Leu
GAG
-
¡û
>C171118224
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
3011263
3011179
-
Leu
GAG
-
¡û
>C000099
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
1387775
1387859
+
Leu
GAG
[Ensembl]
¡û
>WENV180390989
OBPM01000517
[OBPM] marine metagenome; ENVO:00002010
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV180392634
OBPP01000657
[OBPP] marine metagenome; ENVO:00002042
202
286
+
Leu
GAG
[ENA]
¢þ
>WENV180591242
OCOV01005013
[OCOV] marine metagenome; ENVO:01000301
805
721
-
Leu
GAG
[ENA]
¢þ
>WENV180835536
ODKE01004668
[ODKE] human metagenome; G_DNA_Supragingival plaque
2565
2481
-
Leu
GAG
[ENA]
¢þ
>WENV181049467
ODYD01000274
[ODYD] human metagenome; G_DNA_Supragingival plaque
11928
12012
+
Leu
GAG
[ENA]
¢þ
>WENV181364867
OFPE01006629
[OFPE] sediment metagenome; Lake sediment
385
469
+
Leu
GAG
[ENA]
¢þ
>WENV181364947
OFPG01000299
[OFPG] sediment metagenome; Lake sediment
5230
5314
+
Leu
GAG
[ENA]
¢þ
>WENV181381849
OFRF01018049
[OFRF] wastewater metagenome; Exp Tend CN 50WW
638
554
-
Leu
GAG
[ENA]
¢þ
>WENV181836589
OGVJ01013671
[OGVJ] freshwater metagenome; freshwater
393
477
+
Leu
GAG
[ENA]
¢þ
>WENV181851445
OGWE01036572
[OGWE] freshwater metagenome; freshwater
351
267
-
Leu
GAG
[ENA]
¢þ
>WENV181857404
OGWO01003986
[OGWO] freshwater metagenome; freshwater
1305
1221
-
Leu
GAG
[ENA]
¢þ
>WENV183692027
ORMF011852974
[ORMF] groundwater metagenome; groundwater
1541
1457
-
Leu
GAG
[ENA]
¢þ
>WENV183736796
PJUD01000032
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
189712
189628
-
Leu
GAG
[ENA]
¢þ
>WENV183740422
PJUF01001928
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6010
5926
-
Leu
GAG
[ENA]
¢þ
>WENV183741282
PJUF01073822
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
194
278
+
Leu
GAG
[ENA]
¢þ
>WENV170573419
FLYK01023670
[FLYK] hot springs metagenome; Sediment
95
179
+
Leu
GAG
[ENA]
¢þ
>WENV170574355
FLYM01028322
[FLYM] hot springs metagenome; Sediment
199
283
+
Leu
GAG
[ENA]
¢þ
>WENV170650858
JRYE01034766
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
748
664
-
Leu
GAG
[ENA]
¢þ
>W09106076
AASX01000006
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
192208
192124
-
Leu
GAG
[ENA]
¡û
>W09117919
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
492900
492816
-
Leu
GAG
[ENA]
¡û
>W09133895
ACQT01000008
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
28230
28314
+
Leu
GAG
[ENA]
¡û
>W141754960
JNWH01000005
Betaproteobacteria
Delftia tsuruhatensis [JNWH]
76909
76993
+
Leu
GAG
[ENA]
¡û
>W1910888580
NERX01000004
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
420846
420930
+
Leu
GAG
[ENA]
¡û
>W1910888605
NERY01000001
Betaproteobacteria
Limnohabitans sp. MMS-10A-178 [NERY]
1272613
1272697
+
Leu
GAG
[ENA]
¡û
>W1910888715
NESA01000018
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
30668
30584
-
Leu
GAG
[ENA]
¡û
>W1910888848
NESE01000001
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
556056
555972
-
Leu
GAG
[ENA]
¡û
>W1910888890
NESF01000001
Betaproteobacteria
Limnohabitans sp. Hippo3 [NESF]
714835
714751
-
Leu
GAG
[ENA]
¡û
>W1910888962
NESH01000001
Betaproteobacteria
Limnohabitans sp. Bal53 [NESH]
300666
300582
-
Leu
GAG
[ENA]
¡û
>W1910889150
NESL01000008
Betaproteobacteria
Limnohabitans sp. 2KL-1 [NESL]
10040
10124
+
Leu
GAG
[ENA]
¡û
>W1911768536
QXGR01000005
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
259868
259784
-
Leu
GAG
[ENA]
¡û
>W1810078532
PEKB02000099
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
24776
24692
-
Leu
GAG
[ENA]
¡û
>W1810089214
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
1741663
1741747
+
Leu
GAG
[ENA]
¡û
>W1810392029
PXZZ01000002
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
56384
56468
+
Leu
GAG
[ENA]
¡û
>W1810475773
QAJF01001362
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
15533
15449
-
Leu
GAG
[ENA]
¡û
>W1810697069
QLTU01000005
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
77654
77570
-
Leu
GAG
[ENA]
¡û
>W1810759935
QPJU01000005
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
178777
178861
+
Leu
GAG
[ENA]
¡û
>W1810763113
QQAV01000008
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
263090
263174
+
Leu
GAG
[ENA]
¡û
>W10110545
ADCB01000006
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
46214
46298
+
Leu
GAG
[ENA]
¡û
>C11100642
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
4177598
4177682
+
Leu
GAG
[Ensembl]
¡û
>W11112982
ADCB01000006
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
46214
46298
+
Leu
GAG
[ENA]
¡û
>W1510742407
CYIG01000002
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
55742
55658
-
Leu
GAG
[ENA]
¡û
>C11118992
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
2814305
2814221
-
Leu
GAG
[Ensembl]
¡û
>W1511518949
JXYQ01000066
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
18235
18319
+
Leu
GAG
[ENA]
¡û
>W11170785
AFPT01000141
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
7157
7241
+
Leu
GAG
[ENA]
¡û
>C161037568
CP011834
Betaproteobacteria
Limnohabitans sp. 103DPR2 [CP011834]
1388285
1388369
+
Leu
GAG
[Ensembl]
¡û
>C161040261
CP012157
Betaproteobacteria
Betaproteobacteria bacterium UKL13-2 [CP012157]
2654992
2654908
-
Leu
GAG
-
¡û
>C161059539
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
1705514
1705598
+
Leu
GAG
[Ensembl]
¡û
>W1610074367
BCWP01000036
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
23747
23663
-
Leu
GAG
[ENA]
¡û
>W1610726454
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
322672
322588
-
Leu
GAG
[ENA]
¡û
>W1610729026
LMHQ01000030
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
26375
26291
-
Leu
GAG
[ENA]
¡û
>W1610731058
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
879326
879410
+
Leu
GAG
[ENA]
¡û
>W1610734767
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
683625
683709
+
Leu
GAG
[ENA]
¡û
>W1710071485
BCWP01000036
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
23747
23663
-
Leu
GAG
[ENA]
¡û
>W1710512065
FMZC01000008
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
198613
198529
-
Leu
GAG
[ENA]
¡û
>W1710522986
FNHP01000003
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
134356
134272
-
Leu
GAG
[ENA]
¡û
>W1710532508
FNQJ01000003
Betaproteobacteria
Acidovorax soli [FNQJ]
115627
115543
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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