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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112692 (49 seq.)
>W1710860708
LMDC01000001
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
560937
561023
+
Leu
TAG
[ENA]
¡û
>W1710861146
LMDK01000016
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
591000
590914
-
Leu
TAG
[ENA]
¡û
>W1710861672
LMDU01000013
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
251191
251105
-
Leu
TAG
[ENA]
¡û
>W1710866077
LMHE01000014
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
251212
251126
-
Leu
TAG
[ENA]
¡û
>W1710893453
LNET01000111
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
2646
2560
-
Leu
TAG
[ENA]
¡û
>W1711259922
LYVQ01000178
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
7344
7430
+
Leu
TAG
[ENA]
¡û
>W1711387282
MEGM01000136
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
2393
2307
-
Leu
TAG
[ENA]
¡û
>W1711793366
MWLO01000134
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
72578
72664
+
Leu
TAG
[ENA]
¡û
>W1712102885
NIOE01000002
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
318900
318986
+
Leu
TAG
[ENA]
¡û
>W1712102948
NIOF01000001
Betaproteobacteria
Roseateles aquatilis [NIOF]
528194
528108
-
Leu
TAG
[ENA]
¡û
>W1712103040
NIOG01000014
Betaproteobacteria
Roseateles terrae [NIOG]
17421
17335
-
Leu
TAG
[ENA]
¡û
>W1712105707
NISI01000001
Betaproteobacteria
Roseateles puraquae [NISI]
923723
923637
-
Leu
TAG
[ENA]
¡û
>W131214597
ATUI01000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
137368
137454
+
Leu
TAG
[ENA]
¡û
>WENV180558556
OCJY01139898
[OCJY] human gut metagenome; human gut
97
183
+
Leu
TAG
[ENA]
¢þ
>WENV181166992
OEIU01005798
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3526
3612
+
Leu
TAG
[ENA]
¢þ
>WENV181376447
OFQZ01047206
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
662
748
+
Leu
TAG
[ENA]
¢þ
>W141212815
AZRA01000008
Betaproteobacteria
Sphaerotilus natans subsp. natans DSM 6575 [AZRA]
19216
19130
-
Leu
TAG
[ENA]
¡û
>C08005949
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
2776693
2776610
-
Leu
TAG
[Ensembl]
¡û
>WENV170011736
APMI01086681
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1199
1113
-
Leu
TAG
[ENA]
¢þ
>WENV170556236
CXWL01005972
[CXWL] groundwater metagenome; biofilm material
28744
28830
+
Leu
TAG
[ENA]
¢þ
>WENV170559060
CXWL01108653
[CXWL] groundwater metagenome; biofilm material
325
411
+
Leu
TAG
[ENA]
¢þ
>WENV170651147
JRYF01001224
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3811
3725
-
Leu
TAG
[ENA]
¢þ
>WENV170710381
LNFM01001660
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32052
32138
+
Leu
TAG
[ENA]
¢þ
>WENV170710886
LNFM01002925
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30001
30087
+
Leu
TAG
[ENA]
¢þ
>WENV170711845
LNFM01007815
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3107
3021
-
Leu
TAG
[ENA]
¢þ
>WENV170713458
LNFM01032002
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4508
4422
-
Leu
TAG
[ENA]
¢þ
>C181064528
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2638997
2639083
+
Leu
TAG
-
¡û
>W1911766079
QXDH01000003
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
299708
299794
+
Leu
TAG
[ENA]
¡û
>W1810081359
PEOG01000040
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
31619
31533
-
Leu
TAG
[ENA]
¡û
>W1810475757
QAJF01000967
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
8865
8779
-
Leu
TAG
[ENA]
¡û
>W1810658998
QJJS01000011
Betaproteobacteria
Sphaerotilus hippei DSM 566 [QJJS]
157308
157394
+
Leu
TAG
[ENA]
¡û
>W1810884653
QUMT01000009
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
21990
21904
-
Leu
TAG
[ENA]
¡û
>W11150942
AEWG01000160
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
22316
22230
-
Leu
TAG
[ENA]
¡û
>W11187680
CAFG01000225
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
11480
11566
+
Leu
TAG
[ENA]
¡û
>C121001122
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
2964780
2964694
-
Leu
TAG
[Ensembl]
¡û
>C161036460
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
3228749
3228663
-
Leu
TAG
-
¡û
>C161060271
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1696204
1696290
+
Leu
TAG
[Ensembl]
¡û
>W1610076232
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
104771
104857
+
Leu
TAG
[ENA]
¡û
>W121060095
AJFF01000100
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
3798
3884
+
Leu
TAG
[ENA]
¡û
>W121127041
CAFG01000225
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
11480
11566
+
Leu
TAG
[ENA]
¡û
>W1610723054
LMDC01000001
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
560937
561023
+
Leu
TAG
[ENA]
¡û
>W1610723492
LMDK01000016
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
591000
590914
-
Leu
TAG
[ENA]
¡û
>W1610724018
LMDU01000013
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
251191
251105
-
Leu
TAG
[ENA]
¡û
>W1610728423
LMHE01000014
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
251212
251126
-
Leu
TAG
[ENA]
¡û
>W1610753719
LNET01000111
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
2646
2560
-
Leu
TAG
[ENA]
¡û
>W1710074047
BCYP01000006
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
104771
104857
+
Leu
TAG
[ENA]
¡û
>W1710544462
FOAV01000004
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
386967
387053
+
Leu
TAG
[ENA]
¡û
>W1710575421
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
1057830
1057916
+
Leu
TAG
[ENA]
¡û
>W1710597157
FTMZ01000033
Betaproteobacteria
Sphaerotilus natans [FTMZ]
28582
28668
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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